Sodium in PDB 8v4h: X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol

The structure of X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol, PDB code: 8v4h was solved by J.B.Thoden, M.E.Schumann, H.M.Holden, F.M.Raushel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.06 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.76, 101.593, 133.304, 90, 90, 90
R / Rfree (%)	20.7 / 28.2

The structure of X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol (pdb code 8v4h). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol, PDB code: 8v4h:

Sodium binding site 1 out of 1 in the X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol within 5.0Å range: probe atom residue distance (Å) B Occ B:Na404 b:32.8 occ:1.00 OE2 B:GLU152 2.7 16.3 1.0 O B:HOH523 2.8 28.9 1.0 O B:HOH525 2.8 10.4 1.0 O B:ASN304 2.8 18.7 1.0 N B:LYS307 3.2 19.0 1.0 N B:LYS306 3.3 21.3 1.0 OE1 B:GLU152 3.4 17.1 1.0 CD B:GLU152 3.4 17.5 1.0 OD1 B:ASN304 3.4 17.0 1.0 CG B:LYS307 3.5 27.0 1.0 C B:SER305 3.6 19.7 1.0 C B:ASN304 3.6 20.0 1.0 CA B:SER305 3.6 20.3 1.0 CB B:LYS307 3.7 23.9 1.0 N B:SER305 3.9 18.2 1.0 CA B:LYS307 4.0 21.5 1.0 C B:LYS306 4.1 20.0 1.0 CA B:LYS306 4.1 21.1 1.0 O B:SER305 4.3 17.7 1.0 N B:ASN259 4.3 17.2 1.0 CG B:ASN304 4.5 18.8 1.0 CB B:LYS306 4.5 24.0 1.0 CB B:ASN259 4.5 20.4 1.0 O B:HOH588 4.6 26.0 1.0 O B:ASN259 4.6 20.0 1.0 CE B:LYS307 4.6 27.9 1.0 CD B:LYS307 4.7 28.2 1.0 N B:ILE308 4.7 18.1 1.0 ND2 B:ASN259 4.8 19.1 1.0 CB B:ASN304 4.8 21.1 1.0 CA B:ASN304 4.8 20.8 1.0 CG B:GLU152 4.9 18.1 1.0 C B:LYS307 4.9 19.3 1.0 CA B:ASN259 4.9 18.5 1.0

M.K.Ghosh, J.B.Thoden, M.E.Schumann, H.M.Holden, F.M.Raushel. Biosynthesis of Cdp-D-Glucitol For the Capsular Polysaccharides of Campylobacter Jejuni To Be Published.