Sodium in PDB 8v6l: Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs

Sodium Binding Sites:

The binding sites of Sodium atom in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs (pdb code 8v6l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs, PDB code: 8v6l:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in 8v6l

Go back to Sodium Binding Sites List in 8v6l
Sodium binding site 1 out of 3 in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na907

b:55.2
occ:1.00
O D:GLY638 4.4 43.8 1.0
O C:GLY638 4.4 48.0 1.0
O B:GLY638 4.4 47.4 1.0
O A:GLY638 4.5 44.4 1.0
C D:GLY638 4.9 43.8 1.0
C C:GLY638 4.9 48.0 1.0
C B:GLY638 4.9 47.4 1.0
C A:GLY638 4.9 44.4 1.0
NA B:NA908 4.9 55.2 1.0

Sodium binding site 2 out of 3 in 8v6l

Go back to Sodium Binding Sites List in 8v6l
Sodium binding site 2 out of 3 in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs within 5.0Å range:

Sodium binding site 3 out of 3 in 8v6l

Go back to Sodium Binding Sites List in 8v6l
Sodium binding site 3 out of 3 in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na908

b:55.2
occ:1.00
NA A:NA907 4.9 55.2 1.0

Reference:

K.D.Nadezhdin, A.I.Sobolevsky. TRPV3 Activation By Different Agonists Accompanied By Lipid Dissociation From the Vanilloid Site To Be Published.
Page generated: Wed Oct 9 13:58:16 2024

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