Sodium in PDB 8v6l: Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs

The binding sites of Sodium atom in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs (pdb code 8v6l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs, PDB code: 8v6l:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ A:Na907 b:55.2 occ:1.00 O D:GLY638 4.4 43.8 1.0 O C:GLY638 4.4 48.0 1.0 O B:GLY638 4.4 47.4 1.0 O A:GLY638 4.5 44.4 1.0 C D:GLY638 4.9 43.8 1.0 C C:GLY638 4.9 48.0 1.0 C B:GLY638 4.9 47.4 1.0 C A:GLY638 4.9 44.4 1.0 NA B:NA908 4.9 55.2 1.0

Sodium binding site 2 out of 3 in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs within 5.0Å range:

Sodium binding site 3 out of 3 in the Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Open-State Cryo-Em Structure of Human TRPV3 in Presence of Tetrahydrocannabivarin (Thcv) in CNW30 Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ B:Na908 b:55.2 occ:1.00 NA A:NA907 4.9 55.2 1.0

K.D.Nadezhdin, A.I.Sobolevsky. TRPV3 Activation By Different Agonists Accompanied By Lipid Dissociation From the Vanilloid Site To Be Published.