Sodium in PDB 8v4v: Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae

The structure of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae, PDB code: 8v4v was solved by D.M.Wood, R.C.J.Dobson, C.R.Horne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.70 / 2.95
Space group	C 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	116.873, 223.646, 52.734, 90, 90, 90
R / Rfree (%)	25.2 / 30.1

The structure of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae (pdb code 8v4v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae, PDB code: 8v4v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Na303 b:63.6 occ:1.00 H B:ILE233 2.7 75.8 1.0 HB3 B:SER97 2.8 87.1 1.0 HG23 B:ILE233 2.8 77.0 1.0 HB3 B:HIS224 2.9 80.1 1.0 H B:SER225 3.0 83.2 1.0 HG2 B:GLN226 3.0 83.7 1.0 H B:GLN226 3.0 84.8 1.0 HB2 B:GLN226 3.1 84.6 1.0 HG12 B:ILE233 3.1 74.2 1.0 OG B:SER97 3.1 73.2 1.0 HA B:ARG232 3.1 79.0 1.0 CB B:SER97 3.4 72.5 1.0 HD1 B:HIS224 3.5 75.8 1.0 HG3 B:ARG232 3.5 81.9 1.0 HG3 B:GLN226 3.5 83.7 1.0 HG2 B:ARG232 3.5 81.9 1.0 CG B:GLN226 3.5 69.8 1.0 N B:ILE233 3.6 63.2 1.0 N B:GLN226 3.6 70.7 1.0 N B:SER225 3.7 69.3 1.0 CB B:GLN226 3.7 70.5 1.0 CG2 B:ILE233 3.8 64.2 1.0 CB B:HIS224 3.8 66.7 1.0 HG B:SER97 3.9 87.9 1.0 CG B:ARG232 4.0 68.2 1.0 CG1 B:ILE233 4.0 61.9 1.0 HB2 B:SER225 4.0 85.1 1.0 CA B:ARG232 4.0 65.8 1.0 HB2 B:SER97 4.0 87.1 1.0 HG21 B:ILE233 4.2 77.0 1.0 ND1 B:HIS224 4.2 63.1 1.0 HA B:HIS224 4.2 81.2 1.0 CB B:ILE233 4.3 61.4 1.0 CA B:GLN226 4.3 71.3 1.0 C B:ARG232 4.3 64.1 1.0 HB2 B:HIS224 4.3 80.1 1.0 HG22 B:ILE233 4.3 77.0 1.0 C B:SER225 4.4 70.4 1.0 CA B:SER225 4.4 70.3 1.0 HA B:SER97 4.4 89.4 1.0 CA B:HIS224 4.4 67.6 1.0 C B:HIS224 4.5 68.4 1.0 HG13 B:ILE233 4.5 74.2 1.0 CA B:ILE233 4.5 62.3 1.0 CG B:HIS224 4.5 65.3 1.0 HB3 B:GLN226 4.5 84.6 1.0 CB B:SER225 4.6 70.9 1.0 CA B:SER97 4.6 74.5 1.0 CB B:ARG232 4.6 66.5 1.0 HD13 B:ILE233 4.7 76.9 1.0 OG B:SER225 4.7 72.8 1.0 HG B:SER225 4.8 87.4 1.0 HA B:GLN226 4.9 85.6 1.0 O B:GLN231 4.9 67.3 1.0 CD1 B:ILE233 4.9 64.0 1.0 CD B:GLN226 5.0 70.6 1.0

Sodium binding site 2 out of 2 in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:59.6 occ:1.00 HG12 A:ILE233 2.6 71.6 1.0 H A:ILE233 2.6 70.8 1.0 HB3 A:HIS224 2.9 76.5 1.0 HG2 A:GLN226 2.9 78.4 1.0 HB3 A:SER97 2.9 84.6 1.0 H A:SER225 3.0 77.4 1.0 H A:GLN226 3.0 78.4 1.0 HB2 A:GLN226 3.0 77.8 1.0 HA A:ARG232 3.1 73.4 1.0 HD2 A:HIS224 3.2 74.3 1.0 OG A:SER97 3.2 69.7 1.0 HG23 A:ILE233 3.3 71.9 1.0 N A:ILE233 3.5 59.0 1.0 CG A:GLN226 3.5 65.3 1.0 CG1 A:ILE233 3.5 59.6 1.0 CB A:SER97 3.6 70.5 1.0 HG3 A:GLN226 3.6 78.4 1.0 N A:GLN226 3.6 65.3 1.0 N A:SER225 3.6 64.5 1.0 CB A:GLN226 3.7 64.8 1.0 CB A:HIS224 3.7 63.7 1.0 HD3 A:ARG232 3.7 77.2 1.0 HB3 A:ARG232 3.8 74.5 1.0 CD2 A:HIS224 3.9 61.9 1.0 HA A:HIS224 3.9 76.4 1.0 CA A:ARG232 3.9 61.1 1.0 HD13 A:ILE233 3.9 74.8 1.0 HG A:SER97 4.0 83.6 1.0 HG13 A:ILE233 4.1 71.6 1.0 HB2 A:SER97 4.1 84.6 1.0 CG2 A:ILE233 4.1 59.9 1.0 CG A:HIS224 4.1 63.8 1.0 OG A:SER225 4.1 66.7 1.0 CD1 A:ILE233 4.2 62.3 1.0 CB A:ILE233 4.2 58.3 1.0 HD11 A:ILE233 4.2 74.8 1.0 CA A:HIS224 4.2 63.6 1.0 C A:ARG232 4.2 60.1 1.0 CA A:GLN226 4.2 65.1 1.0 C A:SER225 4.3 65.3 1.0 CB A:ARG232 4.3 62.1 1.0 C A:HIS224 4.3 63.6 1.0 CA A:SER225 4.4 64.3 1.0 CA A:ILE233 4.4 57.6 1.0 HB2 A:HIS224 4.5 76.5 1.0 CD A:ARG232 4.5 64.4 1.0 HB3 A:GLN226 4.5 77.8 1.0 HG21 A:ILE233 4.6 71.9 1.0 HD2 A:ARG232 4.6 77.2 1.0 HG2 A:ARG232 4.6 76.3 1.0 HA A:SER97 4.7 87.2 1.0 HE1 A:MET101 4.7 78.5 1.0 HG A:SER225 4.7 80.1 1.0 CA A:SER97 4.7 72.6 1.0 CG A:ARG232 4.7 63.5 1.0 HE3 A:MET101 4.7 78.5 1.0 HG22 A:ILE233 4.8 71.9 1.0 HA A:GLN226 4.8 78.2 1.0 CB A:SER225 4.8 64.3 1.0 HE21 A:GLN226 4.8 80.6 1.0 CD A:GLN226 4.9 65.9 1.0 O A:GLN231 5.0 62.4 1.0

D.M.Wood, R.C.J.Dobson, C.R.Horne. Structure of Full-Length Nan-Regulatory Protein (Nanr) From Streptococcus Pneumoniae To Be Published.