Sodium in PDB 8v6o: Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs

The binding sites of Sodium atom in the Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs (pdb code 8v6o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs, PDB code: 8v6o:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ A:Na912 b:6.2 occ:1.00 O D:GLY638 3.8 67.3 1.0 O A:GLY638 4.1 67.2 1.0 O C:GLY638 4.2 67.9 1.0 O B:GLY638 4.2 66.8 1.0 CA D:GLY638 4.7 67.3 1.0 C D:GLY638 4.7 67.3 1.0 CA A:GLY638 4.9 67.2 1.0 C A:GLY638 4.9 67.2 1.0 O A:HOH1001 5.0 5.1 1.0 O B:HOH1001 5.0 2.4 1.0

Sodium binding site 2 out of 3 in the Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ A:Na913 b:6.2 occ:1.00 CG1 D:VAL681 3.6 81.1 1.0 CG1 C:VAL681 3.9 83.1 1.0 CG1 A:VAL681 3.9 82.1 1.0 CG1 B:VAL681 3.9 81.7 1.0 SD D:MET677 4.0 69.3 1.0 SD A:MET677 4.2 70.3 1.0 SD B:MET677 4.3 70.1 1.0 SD C:MET677 4.3 70.3 1.0 CG2 D:VAL681 4.5 81.1 1.0 CB D:VAL681 4.6 81.1 1.0 CG2 C:VAL681 4.6 83.1 1.0 CG2 B:VAL681 4.8 81.7 1.0 CG2 A:VAL681 4.8 82.1 1.0 CB C:VAL681 4.8 83.1 1.0 CB A:VAL681 4.9 82.1 1.0 CB B:VAL681 4.9 81.7 1.0

Sodium binding site 3 out of 3 in the Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Inactivated-State Cryo-Em Structure of Human TRPV3 in Presence of 2- Apb in CNW30 Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ D:Na911 b:6.2 occ:1.00 O D:HOH1013 4.4 2.3 1.0 O A:HOH1012 4.4 2.1 1.0 O C:HOH1009 4.4 5.7 1.0 O B:HOH1010 4.4 0.4 1.0 O A:HOH1003 4.8 4.7 1.0 O C:HOH1002 4.9 7.9 1.0 O B:HOH1003 4.9 2.6 1.0 O D:HOH1003 4.9 3.5 1.0

K.D.Nadezhdin, A.I.Sobolevsky. TRPV3 Activation By Different Agonists Accompanied By Lipid Dissociation From the Vanilloid Site To Be Published.