Sodium in PDB, part 254 (files: 10121-10160),
PDB 7q1p-7qte
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10121-10160 (PDB 7q1p-7qte).
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7q1p (Na: 1) - Crystal Structure of Human Butyrylcholinesterase in Complex with N- [(2R)-3-[(Cyclohexylmethyl)Amino]-2-Hydroxypropyl]-3,3- Diphenylpropanamide
Other atoms:
Cl (8);
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7q1r (Na: 1) - A De Novo Designed Homo-Dimeric Antiparallel Coiled Coil Apcc-Di
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7q36 (Na: 1) - Crystal Structure of KR2 Sodium Pump Rhodopsin Pressurized with Krypton
Other atoms:
Kr (11);
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7q3z (Na: 2) - Dna/Rna Binding Protein
Other atoms:
Zn (2);
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7q47 (Na: 2) - Endolysin From Bacteriophage ENC34, Catalytic Domain
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7q5e (Na: 1) - Crystal Structure of F2F-2020209-00X Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2.
Other atoms:
Cl (2);
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7q5f (Na: 1) - Crystal Structure of F2F-2020216-01X Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2.
Other atoms:
Cl (6);
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7q6q (Na: 2) - KEAP1 Compound Complex
Other atoms:
Cl (2);
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7q75 (Na: 1) - Room Temperature Structure of Rnase A at Atmospheric Pressure
Other atoms:
Cl (3);
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7q76 (Na: 1) - Room Temperature Structure of Rnase A at 22 Mpa Helium Gas Pressure in A Sapphire Capillary
Other atoms:
Cl (3);
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7q77 (Na: 1) - Room Temperature Structure of Rnase A at 50 Mpa Helium Gas Pressure in A Sapphire Capillary
Other atoms:
Cl (3);
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7q78 (Na: 1) - Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary
Other atoms:
Cl (3);
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7q79 (Na: 1) - Room Temperature Structure of Rnase A at 100 Mpa Helium Gas Pressure in A Sapphire Capillary
Other atoms:
Cl (3);
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7q7a (Na: 1) - Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary
Other atoms:
Cl (3);
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7q7b (Na: 1) - Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release
Other atoms:
Cl (3);
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7q80 (Na: 1) - Crystal Structure of the Methyltransferase-Ribozyme 1, No Magnesium Condition (with 1-Methyl-Adenosine)
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7q89 (Na: 8) - Olep Mutant G92W in Complex with 6DEB
Other atoms:
Fe (6);
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7q9l (Na: 1) - Transthyretin Complexed with (E)-4-(2-(Naphthalen-1-Yl)Vinyl)Benzene- 1,2-Diol
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7q9o (Na: 1) - Complex of Transthyretin with Resveratrol Exhibits Multiple Binding Modes
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7qbs (Na: 1) - B12-Dependent Radical Sam Methyltransferase, MMP10 with [4FE-4S] Cluster, Cobalamin, S-Adenosyl-L-Methionine, and Peptide Bound.
Other atoms:
Fe (5);
Co (1);
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7qbt (Na: 4) - B12-Dependent Radical Sam Methyltransferase, MMP10 with [4FE-4S] Cluster, Cobalamin, and S-Methyl-5'-Thioadenosine Bound.
Other atoms:
Co (4);
Fe (20);
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7qbu (Na: 2) - B12-Dependent Radical Sam Methyltransferase, MMP10 with [4FE-4S] Cluster, Cobalamin, and S-Methyl-5'-Thioadenosine Bound.
Other atoms:
Fe (10);
Co (2);
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7qbv (Na: 4) - B12-Dependent Radical Sam Methyltransferase, MMP10 with [4FE-4S] Cluster, Cobalamin, and S-Adenosyl-L-Homocysteine Bound.
Other atoms:
Co (4);
Fe (20);
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7qdj (Na: 2) - Racemic Structure of Pk-10 and Pk-11
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7qdk (Na: 3) - A Trimeric De Novo Coiled-Coil Assembly: Cc-Typen-Lald
Other atoms:
Br (3);
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7qdn (Na: 6) - Structure of Human Liver Pyruvate Kinase From Which the B Domain Has Been Deleted
Other atoms:
K (8);
Mg (8);
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7qdq (Na: 2) - Crystal Structure of HDM2 in Complex with Caylin-1
Other atoms:
Cl (11);
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7qf0 (Na: 1) - Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325
Other atoms:
Cl (3);
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7qf7 (Na: 1) - Orthorhombic Crystal Structure of Ptg CBM21 in Complex with Beta- Cyclodextrin
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7qh0 (Na: 1) - Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation
Other atoms:
Cl (2);
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7qha (Na: 2) - Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol
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7qhp (Na: 2) - Structure of I-AG7 with A Bound Hybrid Insulin Peptide
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7qkb (Na: 4) - Crystal Structure of Human Cathepsin L in Complex with Covalently Bound GC376
Other atoms:
Cl (1);
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7qlh (Na: 1) - Crystal Structure of S-Layer Protein Slpa From Lactobacillus Amylovorus, Domain I (Aa 48-213)
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7qny (Na: 1) - The Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Complex with Covox-58 and Covox-158 Fabs
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7qoa (Na: 2) - Structure of Codb, A Cytosine Transporter in An Outward-Facing Conformation
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7qq1 (Na: 1) - X-Ray Structure of the Adduct Obtained Upon Reaction of [Cis- RH2(OCOCH3)2(OCOCF3)2] with Hewl
Other atoms:
Rh (3);
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7qta (Na: 1) - S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
Other atoms:
Zn (6);
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7qtd (Na: 2) - Crystal Structure of the Fe(II)/Alpha-Ketoglutarate Dependent Dioxygenase PLAO1 in Complex with Iron and Alpha-Ketoglutarate
Other atoms:
Fe (4);
-
7qte (Na: 3) - Crystal Structure of the Fe(II)/Alpha-Ketoglutarate Dependent Dioxygenase PLAO1 in Complex with Cobalt and Succinate
Other atoms:
Co (3);
Page generated: Fri Jul 28 12:35:00 2023
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