Sodium in PDB 7mfp: Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine

The structure of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine, PDB code: 7mfp was solved by C.A.Seltzner, J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.72 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	91.033, 108.548, 145.514, 90, 90, 90
R / Rfree (%)	17.2 / 21.9

The structure of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Sodium atom in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine (pdb code 7mfp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine, PDB code: 7mfp:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range: probe atom residue distance (Å) B Occ B:Na405 b:35.2 occ:1.00 O B:HOH850 2.1 39.5 1.0 O B:HOH793 2.3 30.9 1.0 O B:HOH769 2.5 29.9 1.0 O B:HOH796 2.5 32.7 1.0 O B:ASN246 2.7 11.3 1.0 O B:HOH719 2.7 15.9 1.0 C B:ASN246 3.8 11.0 1.0 CA B:ASN246 4.2 10.3 1.0 CB B:ASN246 4.3 10.7 1.0 O B:HOH685 4.6 22.4 1.0 O B:HOH745 4.7 9.8 1.0 OD1 B:ASN247 4.9 10.7 1.0 N B:ASN247 4.9 11.5 1.0 CG B:ASN246 5.0 11.7 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine within 5.0Å range: probe atom residue distance (Å) B Occ C:Na405 b:26.3 occ:1.00 O D:HOH792 1.9 32.5 1.0 O C:ALA28 2.3 11.1 1.0 O C:HOH643 2.4 15.4 1.0 O C:HOH745 3.3 33.9 1.0 C C:ALA28 3.4 11.2 1.0 CA C:ALA28 3.9 11.6 1.0 OE2 D:GLU11 4.2 26.4 1.0 O C:GLU27 4.5 11.6 1.0 N C:THR29 4.5 11.3 1.0 CB C:ALA28 4.8 12.0 1.0 CA C:THR29 4.9 11.0 1.0

C.A.Seltzner, J.D.Ferek, J.B.Thoden, H.M.Holden. Characterization of An Aminotransferase From Acanthamoeba Polyphaga Mimivirus To Be Published.