Sodium in PDB 7mij: Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius

Sodium Binding Sites:

The binding sites of Sodium atom in the Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius (pdb code 7mij). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius, PDB code: 7mij:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 7mij

Go back to Sodium Binding Sites List in 7mij
Sodium binding site 1 out of 2 in the Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na913

b:39.8
occ:1.00
NA A:NA914 2.4 45.3 1.0
O B:GLY638 2.5 11.1 1.0
O D:GLY638 2.5 11.0 1.0
O C:GLY638 2.5 11.1 1.0
O A:GLY638 2.5 10.8 1.0
C B:GLY638 3.7 11.1 1.0
C D:GLY638 3.7 11.0 1.0
C C:GLY638 3.7 11.1 1.0
C A:GLY638 3.7 10.8 1.0
CA D:GLY638 4.3 11.0 1.0
CA B:GLY638 4.3 11.1 1.0
CA C:GLY638 4.3 11.1 1.0
CA A:GLY638 4.3 10.8 1.0
N B:LEU639 4.7 7.4 1.0
N D:LEU639 4.7 7.9 1.0
N A:LEU639 4.7 7.0 1.0
N C:LEU639 4.7 6.6 1.0
CA A:LEU639 4.9 7.0 1.0
CA B:LEU639 4.9 7.4 1.0
CA D:LEU639 4.9 7.9 1.0
CA C:LEU639 4.9 6.6 1.0

Sodium binding site 2 out of 2 in 7mij

Go back to Sodium Binding Sites List in 7mij
Sodium binding site 2 out of 2 in the Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na914

b:45.3
occ:1.00
NA A:NA913 2.4 39.8 1.0
O A:GLY638 3.5 10.8 1.0
O B:GLY638 3.5 11.1 1.0
O C:GLY638 3.5 11.1 1.0
O D:GLY638 3.5 11.0 1.0
CA B:GLY638 4.2 11.1 1.0
CA D:GLY638 4.2 11.0 1.0
CA C:GLY638 4.2 11.1 1.0
CA A:GLY638 4.2 10.8 1.0
C A:GLY638 4.3 10.8 1.0
C B:GLY638 4.3 11.1 1.0
C D:GLY638 4.3 11.0 1.0
C C:GLY638 4.3 11.1 1.0
O B:ILE637 4.8 6.5 1.0
O D:ILE637 4.8 6.3 1.0
O C:ILE637 4.8 5.6 1.0
O A:ILE637 4.8 6.8 1.0

Reference:

K.D.Nadezhdin, A.Neuberger, Y.A.Trofimov, N.A.Krylov, V.Sinica, N.Kupko, V.Vlachova, E.Zakharian, R.G.Efremov, A.I.Sobolevsky. Structural Mechanism of Heat-Induced Opening of A Temperature-Sensitive Trp Channel. Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
PubMed: 34239124
DOI: 10.1038/S41594-021-00615-4
Page generated: Sat Aug 21 17:24:32 2021

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