Sodium in PDB 7mij: Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius

The binding sites of Sodium atom in the Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius (pdb code 7mij). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius, PDB code: 7mij:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius within 5.0Å range: probe atom residue distance (Å) B Occ A:Na913 b:39.8 occ:1.00 NA A:NA914 2.4 45.3 1.0 O B:GLY638 2.5 11.1 1.0 O D:GLY638 2.5 11.0 1.0 O C:GLY638 2.5 11.1 1.0 O A:GLY638 2.5 10.8 1.0 C B:GLY638 3.7 11.1 1.0 C D:GLY638 3.7 11.0 1.0 C C:GLY638 3.7 11.1 1.0 C A:GLY638 3.7 10.8 1.0 CA D:GLY638 4.3 11.0 1.0 CA B:GLY638 4.3 11.1 1.0 CA C:GLY638 4.3 11.1 1.0 CA A:GLY638 4.3 10.8 1.0 N B:LEU639 4.7 7.4 1.0 N D:LEU639 4.7 7.9 1.0 N A:LEU639 4.7 7.0 1.0 N C:LEU639 4.7 6.6 1.0 CA A:LEU639 4.9 7.0 1.0 CA B:LEU639 4.9 7.4 1.0 CA D:LEU639 4.9 7.9 1.0 CA C:LEU639 4.9 6.6 1.0

Sodium binding site 2 out of 2 in the Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius within 5.0Å range: probe atom residue distance (Å) B Occ A:Na914 b:45.3 occ:1.00 NA A:NA913 2.4 39.8 1.0 O A:GLY638 3.5 10.8 1.0 O B:GLY638 3.5 11.1 1.0 O C:GLY638 3.5 11.1 1.0 O D:GLY638 3.5 11.0 1.0 CA B:GLY638 4.2 11.1 1.0 CA D:GLY638 4.2 11.0 1.0 CA C:GLY638 4.2 11.1 1.0 CA A:GLY638 4.2 10.8 1.0 C A:GLY638 4.3 10.8 1.0 C B:GLY638 4.3 11.1 1.0 C D:GLY638 4.3 11.0 1.0 C C:GLY638 4.3 11.1 1.0 O B:ILE637 4.8 6.5 1.0 O D:ILE637 4.8 6.3 1.0 O C:ILE637 4.8 5.6 1.0 O A:ILE637 4.8 6.8 1.0

K.D.Nadezhdin, A.Neuberger, Y.A.Trofimov, N.A.Krylov, V.Sinica, N.Kupko, V.Vlachova, E.Zakharian, R.G.Efremov, A.I.Sobolevsky. Structural Mechanism of Heat-Induced Opening of A Temperature-Sensitive Trp Channel. Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
PubMed: 34239124
DOI: 10.1038/S41594-021-00615-4