Sodium in PDB 7min: Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius

Sodium Binding Sites:

The binding sites of Sodium atom in the Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius (pdb code 7min). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius, PDB code: 7min:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in 7min

Go back to Sodium Binding Sites List in 7min
Sodium binding site 1 out of 4 in the Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na910

b:194.7
occ:1.00
NA A:NA911 2.3 193.2 1.0
O C:GLY638 2.5 40.0 1.0
O A:GLY638 2.5 42.7 1.0
O B:GLY638 2.5 33.4 1.0
O D:GLY638 2.5 33.8 1.0
NA A:NA912 2.6 193.3 1.0
C C:GLY638 3.7 40.0 1.0
C B:GLY638 3.7 33.4 1.0
C D:GLY638 3.7 33.8 1.0
C A:GLY638 3.7 42.7 1.0
CA B:GLY638 4.4 33.4 1.0
CA C:GLY638 4.4 40.0 1.0
CA D:GLY638 4.4 33.8 1.0
CA A:GLY638 4.4 42.7 1.0
N A:LEU639 4.7 46.8 1.0
N C:LEU639 4.7 43.5 1.0
N B:LEU639 4.7 36.5 1.0
N D:LEU639 4.7 37.0 1.0
CA A:LEU639 4.9 46.8 1.0
CA C:LEU639 4.9 43.5 1.0
CA B:LEU639 4.9 36.5 1.0
CA D:LEU639 4.9 37.0 1.0

Sodium binding site 2 out of 4 in 7min

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Sodium binding site 2 out of 4 in the Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na911

b:193.2
occ:1.00
NA A:NA910 2.3 194.7 1.0
O D:GLY638 3.4 33.8 1.0
O B:GLY638 3.4 33.4 1.0
O C:GLY638 3.4 40.0 1.0
O A:GLY638 3.4 42.7 1.0
O A:GLY640 4.4 66.2 1.0
O B:GLY640 4.4 52.5 1.0
O C:GLY640 4.4 62.0 1.0
O D:GLY640 4.4 53.5 1.0
N A:GLY640 4.5 66.2 1.0
C D:GLY638 4.5 33.8 1.0
C B:GLY638 4.5 33.4 1.0
C C:GLY638 4.5 40.0 1.0
N B:GLY640 4.5 52.5 1.0
C A:GLY638 4.5 42.7 1.0
N D:GLY640 4.5 53.5 1.0
N C:GLY640 4.5 62.0 1.0
CA A:LEU639 4.6 46.8 1.0
CA B:LEU639 4.6 36.5 1.0
CA D:LEU639 4.6 37.0 1.0
CA C:LEU639 4.6 43.5 1.0
C A:LEU639 4.9 46.8 1.0
C B:LEU639 4.9 36.5 1.0
C D:LEU639 4.9 37.0 1.0
C C:LEU639 4.9 43.5 1.0
NA A:NA912 4.9 193.3 1.0

Sodium binding site 3 out of 4 in 7min

Go back to Sodium Binding Sites List in 7min
Sodium binding site 3 out of 4 in the Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na912

b:193.3
occ:1.00
NA A:NA910 2.6 194.7 1.0
O A:GLY638 3.7 42.7 1.0
O B:GLY638 3.7 33.4 1.0
O C:GLY638 3.7 40.0 1.0
O D:GLY638 3.7 33.8 1.0
CA A:GLY638 4.2 42.7 1.0
CA B:GLY638 4.2 33.4 1.0
CA D:GLY638 4.2 33.8 1.0
CA C:GLY638 4.2 40.0 1.0
C A:GLY638 4.4 42.7 1.0
C B:GLY638 4.4 33.4 1.0
C C:GLY638 4.4 40.0 1.0
C D:GLY638 4.4 33.8 1.0
O A:ILE637 4.6 41.5 1.0
O B:ILE637 4.6 32.0 1.0
O D:ILE637 4.6 32.3 1.0
O C:ILE637 4.6 38.5 1.0
NA A:NA911 4.9 193.2 1.0

Sodium binding site 4 out of 4 in 7min

Go back to Sodium Binding Sites List in 7min
Sodium binding site 4 out of 4 in the Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Mouse TRPV3 in CNW11 Nanodiscs, Closed State at 42 Degrees Celsius within 5.0Å range:

Reference:

K.D.Nadezhdin, A.Neuberger, Y.A.Trofimov, N.A.Krylov, V.Sinica, N.Kupko, V.Vlachova, E.Zakharian, R.G.Efremov, A.I.Sobolevsky. Structural Mechanism of Heat-Induced Opening of A Temperature-Sensitive Trp Channel. Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
PubMed: 34239124
DOI: 10.1038/S41594-021-00615-4
Page generated: Sat Aug 21 17:24:06 2021

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