Atomistry » Sodium » PDB 7mrp-7ndh » 7mz6
Atomistry »
  Sodium »
    PDB 7mrp-7ndh »
      7mz6 »

Sodium in PDB 7mz6: Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi

Sodium Binding Sites:

The binding sites of Sodium atom in the Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi (pdb code 7mz6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi, PDB code: 7mz6:

Sodium binding site 1 out of 1 in 7mz6

Go back to Sodium Binding Sites List in 7mz6
Sodium binding site 1 out of 1 in the Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na803

b:34.4
occ:1.00
O C:GLY643 2.3 43.8 1.0
O A:GLY643 2.3 48.7 1.0
O B:GLY643 2.4 43.9 1.0
O D:GLY643 2.4 49.7 1.0
C C:GLY643 3.5 43.8 1.0
C B:GLY643 3.5 43.9 1.0
C A:GLY643 3.5 48.7 1.0
C D:GLY643 3.6 49.7 1.0
SD B:MET644 4.2 45.4 1.0
SD C:MET644 4.2 45.0 1.0
SD D:MET644 4.2 50.0 1.0
CA B:GLY643 4.2 43.9 1.0
CA C:GLY643 4.2 43.8 1.0
SD A:MET644 4.2 49.5 1.0
CA A:GLY643 4.3 48.7 1.0
CA D:GLY643 4.3 49.7 1.0
N C:MET644 4.5 45.0 1.0
N A:MET644 4.5 49.5 1.0
N B:MET644 4.5 45.4 1.0
CG C:MET644 4.6 45.0 1.0
CG D:MET644 4.6 50.0 1.0
N D:MET644 4.6 50.0 1.0
CG A:MET644 4.6 49.5 1.0
CG B:MET644 4.6 45.4 1.0
CA C:MET644 4.7 45.0 1.0
CA A:MET644 4.7 49.5 1.0
CA B:MET644 4.8 45.4 1.0
CA D:MET644 4.8 50.0 1.0
O A:ILE642 5.0 52.5 1.0
O B:ILE642 5.0 45.0 1.0

Reference:

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012
Page generated: Tue Oct 8 18:02:42 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy