Sodium in PDB 7mz6: Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi

The binding sites of Sodium atom in the Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi (pdb code 7mz6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi, PDB code: 7mz6:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Minimal TRPV1 with 1 Perturbed Pi within 5.0Å range: probe atom residue distance (Å) B Occ C:Na803 b:34.4 occ:1.00 O C:GLY643 2.3 43.8 1.0 O A:GLY643 2.3 48.7 1.0 O B:GLY643 2.4 43.9 1.0 O D:GLY643 2.4 49.7 1.0 C C:GLY643 3.5 43.8 1.0 C B:GLY643 3.5 43.9 1.0 C A:GLY643 3.5 48.7 1.0 C D:GLY643 3.6 49.7 1.0 SD B:MET644 4.2 45.4 1.0 SD C:MET644 4.2 45.0 1.0 SD D:MET644 4.2 50.0 1.0 CA B:GLY643 4.2 43.9 1.0 CA C:GLY643 4.2 43.8 1.0 SD A:MET644 4.2 49.5 1.0 CA A:GLY643 4.3 48.7 1.0 CA D:GLY643 4.3 49.7 1.0 N C:MET644 4.5 45.0 1.0 N A:MET644 4.5 49.5 1.0 N B:MET644 4.5 45.4 1.0 CG C:MET644 4.6 45.0 1.0 CG D:MET644 4.6 50.0 1.0 N D:MET644 4.6 50.0 1.0 CG A:MET644 4.6 49.5 1.0 CG B:MET644 4.6 45.4 1.0 CA C:MET644 4.7 45.0 1.0 CA A:MET644 4.7 49.5 1.0 CA B:MET644 4.8 45.4 1.0 CA D:MET644 4.8 50.0 1.0 O A:ILE642 5.0 52.5 1.0 O B:ILE642 5.0 45.0 1.0

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012