Sodium in PDB 7mjc: Crystal Structure Analysis of ALDH1B1

All present enzymatic activity of Crystal Structure Analysis of ALDH1B1:
1.2.1.3;

The structure of Crystal Structure Analysis of ALDH1B1, PDB code: 7mjc was solved by D.Fernandez, J.K.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.68
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.35, 101.35, 186.692, 90, 90, 120
R / Rfree (%)	19.8 / 25.3

The binding sites of Sodium atom in the Crystal Structure Analysis of ALDH1B1 (pdb code 7mjc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure Analysis of ALDH1B1, PDB code: 7mjc:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure Analysis of ALDH1B1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of ALDH1B1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:49.4 occ:1.00 O A:HOH704 2.2 57.8 1.0 O A:GLN196 2.4 58.6 1.0 OD1 A:ASP109 2.4 63.2 1.0 O A:ASP109 2.6 57.2 1.0 O A:VAL40 2.6 66.2 1.0 OG1 A:THR39 2.9 56.3 1.0 C A:ASP109 3.6 57.6 1.0 CG A:ASP109 3.6 65.2 1.0 C A:GLN196 3.6 55.6 1.0 C A:VAL40 3.6 66.3 1.0 N A:VAL40 3.7 66.3 1.0 CA A:ASP109 3.9 61.6 1.0 CA A:VAL40 4.2 66.6 1.0 CB A:ASP109 4.3 62.9 1.0 CB A:THR39 4.3 62.7 1.0 CG2 A:THR197 4.4 59.7 1.0 OD2 A:ASP109 4.5 67.3 1.0 C A:THR39 4.5 63.4 1.0 CA A:GLN196 4.5 57.0 1.0 N A:THR197 4.5 59.3 1.0 CD A:PRO42 4.5 56.5 1.0 CA A:THR197 4.5 59.0 1.0 O A:VAL345 4.7 57.1 1.0 N A:ASN41 4.7 66.3 1.0 CA A:THR39 4.7 63.6 1.0 N A:ASN110 4.7 55.5 1.0 CB A:VAL40 4.8 67.0 1.0 CB A:GLN196 4.9 58.3 1.0 CD1 A:ILE48 4.9 70.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure Analysis of ALDH1B1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure Analysis of ALDH1B1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na602 b:61.7 occ:1.00 OD1 B:ASP109 2.7 68.4 1.0 O B:ASP109 2.8 72.9 1.0 O B:VAL40 2.8 90.6 1.0 OG1 B:THR39 2.9 71.9 1.0 N B:VAL40 3.7 81.3 1.0 N B:THR197 3.7 82.2 1.0 C B:VAL40 3.8 84.4 1.0 CG B:ASP109 3.9 74.7 1.0 C B:ASP109 3.9 77.1 1.0 CA B:GLN196 4.1 75.6 1.0 CB B:GLN196 4.2 75.0 1.0 CA B:VAL40 4.2 81.3 1.0 O B:VAL345 4.2 62.7 1.0 CB B:THR39 4.2 78.5 1.0 CA B:ASP109 4.4 78.0 1.0 C B:GLN196 4.4 82.1 1.0 C B:THR39 4.5 80.5 1.0 CB B:VAL40 4.6 82.6 1.0 CA B:THR39 4.6 81.3 1.0 CA B:THR197 4.7 83.1 1.0 CB B:ASP109 4.7 75.8 1.0 OD2 B:ASP109 4.7 74.3 1.0 CG2 B:THR197 4.8 81.3 1.0 CD B:PRO42 4.9 80.9 1.0 CG2 B:VAL345 5.0 68.6 1.0

D.Fernandez, D.Fernandez, J.K.Chen. N/A N/A.
ISSN: ESSN 1552-4469