Sodium in PDB 7mjd: Crystal Structure Analysis of ALDH1B1

All present enzymatic activity of Crystal Structure Analysis of ALDH1B1:
1.2.1.3;

The structure of Crystal Structure Analysis of ALDH1B1, PDB code: 7mjd was solved by D.Fernandez, J.K.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.37 / 2.12
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.04, 102.04, 186.037, 90, 90, 120
R / Rfree (%)	18.1 / 21.9

The binding sites of Sodium atom in the Crystal Structure Analysis of ALDH1B1 (pdb code 7mjd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure Analysis of ALDH1B1, PDB code: 7mjd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure Analysis of ALDH1B1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of ALDH1B1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:44.6 occ:1.00 O A:HOH737 2.1 51.7 1.0 O A:ASP109 2.4 41.4 1.0 O A:VAL40 2.4 52.0 1.0 OD1 A:ASP109 2.5 44.8 1.0 O A:GLN196 2.5 46.4 1.0 OG1 A:THR39 2.7 49.4 1.0 C A:ASP109 3.4 41.6 1.0 CG A:ASP109 3.5 47.9 1.0 C A:VAL40 3.6 52.5 1.0 N A:VAL40 3.7 49.3 1.0 C A:GLN196 3.8 48.9 1.0 CA A:ASP109 3.9 42.6 1.0 CB A:THR39 4.1 50.9 1.0 CA A:VAL40 4.2 52.0 1.0 CB A:ASP109 4.2 44.6 1.0 OD2 A:ASP109 4.3 46.5 1.0 C A:THR39 4.4 48.0 1.0 CD A:PRO42 4.4 44.3 1.0 CA A:GLN196 4.6 47.3 1.0 CG2 A:THR197 4.6 46.7 1.0 N A:ASN110 4.6 37.7 1.0 CA A:THR39 4.6 49.6 1.0 N A:ASN41 4.6 47.5 1.0 N A:THR197 4.7 45.5 1.0 CA A:THR197 4.7 45.5 1.0 CD1 A:ILE48 4.7 50.3 1.0 CB A:VAL40 4.8 54.5 1.0 O A:VAL345 4.8 36.2 1.0 CG2 A:THR39 4.9 51.8 1.0

Sodium binding site 2 out of 2 in the Crystal Structure Analysis of ALDH1B1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure Analysis of ALDH1B1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na601 b:53.1 occ:1.00 O B:HOH741 2.2 61.4 1.0 OD1 B:ASP109 2.4 59.0 1.0 O B:VAL40 2.4 54.8 1.0 O B:GLN196 2.5 50.9 1.0 O B:ASP109 2.6 57.3 1.0 OG1 B:THR39 2.6 53.6 1.0 CG B:ASP109 3.5 60.3 1.0 C B:VAL40 3.5 58.7 1.0 N B:VAL40 3.6 56.7 1.0 C B:ASP109 3.6 55.4 1.0 C B:GLN196 3.7 53.6 1.0 CB B:THR39 4.0 53.2 1.0 CA B:ASP109 4.0 55.5 1.0 CA B:VAL40 4.1 56.1 1.0 OD2 B:ASP109 4.3 63.4 1.0 CB B:ASP109 4.3 58.7 1.0 C B:THR39 4.3 55.9 1.0 CA B:GLN196 4.5 48.5 1.0 CA B:THR39 4.5 57.2 1.0 N B:THR197 4.6 49.1 1.0 CD B:PRO42 4.6 54.9 1.0 CG2 B:THR197 4.7 53.1 1.0 N B:ASN41 4.7 56.4 1.0 CA B:THR197 4.7 51.7 1.0 CB B:VAL40 4.7 58.8 1.0 N B:ASN110 4.8 52.7 1.0 CD1 B:ILE48 4.8 69.7 1.0 CG2 B:THR39 4.8 53.6 1.0 O B:VAL345 4.9 48.2 1.0 CB B:GLN196 5.0 49.2 1.0

D.Fernandez, D.Fernandez, J.K.Chen. N/A N/A.
ISSN: ESSN 1552-4469