Sodium in PDB 7mz0: Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna

All present enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna:
2.7.7.7;

The structure of Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna, PDB code: 7mz0 was solved by M.-C.Koag, S.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.79 / 2.02
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.649, 79.172, 54.819, 90, 106.27, 90
R / Rfree (%)	22.1 / 27.6

The binding sites of Sodium atom in the Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna (pdb code 7mz0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna, PDB code: 7mz0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:10.3 occ:1.00 OP1 P:DG9 2.3 10.1 1.0 O A:THR101 2.3 11.7 1.0 O A:ILE106 2.4 9.9 1.0 O A:VAL103 2.5 11.7 1.0 O A:HOH594 2.6 16.1 1.0 C A:THR101 3.3 12.7 1.0 O A:HOH502 3.3 12.8 1.0 C A:ILE106 3.4 11.1 1.0 C A:VAL103 3.4 14.6 1.0 P P:DG9 3.4 15.0 1.0 OP2 P:DG9 3.7 10.3 1.0 N A:ILE106 3.8 10.5 1.0 CA A:THR101 3.8 11.8 1.0 CA A:SER104 4.0 13.7 1.0 N A:GLY105 4.0 13.4 1.0 N A:SER104 4.0 14.0 1.0 CA A:ILE106 4.0 11.6 1.0 N A:VAL103 4.1 13.0 1.0 N A:GLY107 4.3 12.1 1.0 N A:ARG102 4.3 14.4 1.0 C A:ARG102 4.3 19.2 1.0 C A:SER104 4.4 13.0 1.0 CB A:THR101 4.4 13.8 1.0 CA A:VAL103 4.4 13.6 1.0 O3' P:DC8 4.5 14.0 1.0 CB A:ILE106 4.5 13.8 1.0 O5' P:DG9 4.5 13.6 1.0 CA A:GLY107 4.6 13.8 1.0 C A:GLY105 4.6 11.8 1.0 CA A:ARG102 4.6 13.5 1.0 O A:ARG102 4.8 17.1 1.0 O A:LEU100 4.9 13.1 1.0 CA A:GLY105 4.9 10.6 1.0

Sodium binding site 2 out of 2 in the Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:25.1 occ:1.00 O A:LYS60 2.5 28.7 1.0 O A:VAL65 2.5 23.9 1.0 O D:HOH112 2.5 23.6 1.0 O A:HOH586 2.5 32.2 1.0 O A:LEU62 2.5 24.2 1.0 OP1 D:DC3 2.5 23.2 1.0 C A:VAL65 3.5 20.8 1.0 C A:LEU62 3.5 22.1 1.0 C A:LYS60 3.6 28.1 1.0 P D:DC3 3.6 21.7 1.0 N A:VAL65 3.8 19.3 1.0 OP2 D:DC3 3.9 17.1 1.0 CA A:VAL65 4.1 20.2 1.0 N A:GLY64 4.1 25.4 1.0 N A:LEU62 4.2 23.5 1.0 C A:LYS61 4.2 26.4 1.0 CA A:PRO63 4.2 26.3 1.0 N A:PRO63 4.2 25.3 1.0 CA A:LYS60 4.3 21.5 1.0 O A:LYS61 4.4 30.0 1.0 CB A:VAL65 4.5 23.4 1.0 CG A:LYS60 4.5 26.4 1.0 CA A:LEU62 4.5 22.6 1.0 N A:GLY66 4.5 19.3 1.0 N A:LYS61 4.5 28.2 1.0 O3' D:DT2 4.6 22.9 1.0 C A:PRO63 4.6 28.0 1.0 CA A:LYS61 4.7 21.0 1.0 CA A:GLY66 4.8 21.5 1.0 C A:GLY64 4.8 22.6 1.0 O5' D:DC3 4.8 21.3 1.0

M.-C.Koag, S.Lee. Structure of Human Dna Polymerase Beta Complexed with Dza As the Template Base in A 1-Nucleotide Gapped Dna To Be Published.