Sodium in PDB, part 212 (files: 8441-8480),
PDB 6oor-6p8m
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 8441-8480 (PDB 6oor-6p8m).
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6oor (Na: 4) - Structure of 1B1 Bound to Mouse CD1D
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6op6 (Na: 1) - Structure of Vim-20 in the Reduced State
Other atoms:
Zn (3);
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6op8 (Na: 1) - S. Pombe UBC7/U7BR Complex
Other atoms:
Mg (1);
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6oqq (Na: 2) - Legionella Pneumophila Sidj/Saccharomyces Cerevisiae Calmodulin Complex
Other atoms:
Mg (7);
Ca (4);
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6orj (Na: 3) - Central Spike of Phikz Phage Tail
Other atoms:
Cl (5);
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6osr (Na: 3) - Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)
Other atoms:
K (2);
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6ou1 (Na: 2) - Crystal Structure of the Computationally-Derived 21-Variant of the Myocilin Olfactomedin Domain
Other atoms:
Ca (2);
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6ou2 (Na: 1) - Crystal Structure of the D478N Variant of the Myocilin Olfactomedin Domain
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6ou3 (Na: 1) - Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain
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6ouv (Na: 2) - 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Deinococcus Radiodurans with Methylacetylphosphonate (Map) Bound
Other atoms:
Mg (2);
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6ouw (Na: 1) - 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Deinococcus Radiodurans with Enamine Intermediate Bound
Other atoms:
Mg (1);
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6ovl (Na: 1) - 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp
Other atoms:
K (1);
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6ovn (Na: 1) - Crystal Structure of the Unliganded Clone 2 Tcr
Other atoms:
Cl (3);
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6ovt (Na: 1) - Crystal Structure of Ilvd From Mycobacterium Tuberculosis
Other atoms:
Mg (12);
Fe (8);
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6oxn (Na: 3) - 2.6 Angstrom Structure of W45F/H46S Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp
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6oz3 (Na: 1) - Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH057 GP120 Core
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6oze (Na: 2) - Crystal Structure of the Catalytic Domain of Human Endonuclease V (C140S/C225S/C226A/C228S)
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6ozf (Na: 2) - Crystal Structure of Thermotoga Maritima (Tm) Endonuclease V (D110N) in Complex with A 12MER Dna Containing An Inosine Followed By A Ribo- Adenosine
Other atoms:
Ca (4);
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6ozl (Na: 1) - Crystal Structure of Mus Musculus (Mm) Endonuclease V in Complex with A 23MER Rna Oligo Containing An Inosine After A 2 Min Soak in MN2+
Other atoms:
Mn (4);
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6ozs (Na: 2) - Crystal Structure of Mus Musculus (Mm) Endonuclease V in Complex with A 23MER Rna Oligo Containing An Inosine After A 90 Min Soak in 10 Mm MG2+
Other atoms:
Mg (6);
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6p0c (Na: 1) - Human Dna Ligase 1 Bound to An Adenylated, Hydroxyl Terminated Dna Nick in Edta
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6p0i (Na: 1) - Crystal Structure of Gdp-Bound Human Rala in A Covalent Complex with Aryl Sulfonyl Fluoride Compounds.
Other atoms:
Ca (1);
Cl (3);
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6p1n (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Dampnpp
Other atoms:
Mg (2);
Cl (2);
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6p1o (Na: 1) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Damp
Other atoms:
Mg (1);
Mn (1);
Cl (3);
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6p1p (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Dcmpnpp
Other atoms:
Mg (2);
Cl (1);
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6p1q (Na: 1) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Dcmp
Other atoms:
Mg (2);
Cl (3);
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6p1r (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Ampnpp
Other atoms:
Mg (2);
Cl (3);
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6p1s (Na: 2) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Amp
Other atoms:
Mn (1);
Cl (2);
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6p1t (Na: 2) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Cmpcpp
Other atoms:
Mg (2);
Cl (3);
-
6p1u (Na: 3) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Cmp
Other atoms:
Mn (1);
Cl (4);
-
6p1v (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Undamaged Template Dg and Bound Incoming Dcmpnpp
Other atoms:
Mg (2);
Cl (3);
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6p1w (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Undamaged Template Dg and Bound Incoming Cmpcpp
Other atoms:
Mg (2);
Cl (4);
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6p2t (Na: 1) - Bshb From Bacillus Subtilis Complexed with Citrate
Other atoms:
Zn (1);
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6p3j (Na: 1) - Crystal Structure of Ligu
Other atoms:
Cl (9);
Ca (2);
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6p4d (Na: 1) - Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R
Other atoms:
Cl (4);
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6p4e (Na: 2) - Leishmania Mexicana Cpb in Complex with An Aza-Nitrile Inhibitor
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6p5o (Na: 1) - The Structure of Rat Cytosolic Pepck in Complex with 3- (Carboxymethylthiol)-Picolinic Acid
Other atoms:
Mn (2);
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6p8k (Na: 4) - Escherichia Coli Bacterioferritin Substituted with Zinc Protoporphyrin IX
Other atoms:
Zn (24);
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6p8l (Na: 4) - Escherichia Coli Bacterioferritin Substituted with Zinc Protoporphyrin IX (Zn Absorption Edge X-Ray Data)
Other atoms:
Zn (24);
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6p8m (Na: 4) - Crystal Structure of Antibody P-P3B3 A60C Heavy Chain in Complex with 426C Hiv-1 GP120 Core G459C
Other atoms:
Cl (1);
Page generated: Sun Dec 15 11:40:41 2024
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