Atomistry » Sodium » PDB 6oog-6p8k
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Sodium in PDB, part 212 (files: 8441-8480), PDB 6oog-6p8k

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 8441-8480 (PDB 6oog-6p8k).
  1. 6oog (Na: 1) - Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG
  2. 6ooi (Na: 8) - Crystal Structure of Triosephosphate Isomerase From Schistosoma Mansoni in Complex with 2PG
    Other atoms: Cl (6);
  3. 6oor (Na: 4) - Structure of 1B1 Bound to Mouse CD1D
  4. 6op6 (Na: 1) - Structure of Vim-20 in the Reduced State
    Other atoms: Zn (3);
  5. 6op8 (Na: 1) - S. Pombe UBC7/U7BR Complex
    Other atoms: Mg (1);
  6. 6oqq (Na: 2) - Legionella Pneumophila Sidj/Saccharomyces Cerevisiae Calmodulin Complex
    Other atoms: Mg (7); Ca (4);
  7. 6orj (Na: 3) - Central Spike of Phikz Phage Tail
    Other atoms: Cl (5);
  8. 6osr (Na: 3) - Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)
    Other atoms: K (2);
  9. 6ou1 (Na: 2) - Crystal Structure of the Computationally-Derived 21-Variant of the Myocilin Olfactomedin Domain
    Other atoms: Ca (2);
  10. 6ou2 (Na: 1) - Crystal Structure of the D478N Variant of the Myocilin Olfactomedin Domain
  11. 6ou3 (Na: 1) - Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain
  12. 6ouv (Na: 2) - 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Deinococcus Radiodurans with Methylacetylphosphonate (Map) Bound
    Other atoms: Mg (2);
  13. 6ouw (Na: 1) - 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Deinococcus Radiodurans with Enamine Intermediate Bound
    Other atoms: Mg (1);
  14. 6ovl (Na: 1) - 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp
    Other atoms: K (1);
  15. 6ovn (Na: 1) - Crystal Structure of the Unliganded Clone 2 Tcr
    Other atoms: Cl (3);
  16. 6ovt (Na: 1) - Crystal Structure of Ilvd From Mycobacterium Tuberculosis
    Other atoms: Mg (12); Fe (8);
  17. 6oxn (Na: 3) - 2.6 Angstrom Structure of W45F/H46S Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp
  18. 6oz3 (Na: 1) - Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH057 GP120 Core
  19. 6oze (Na: 2) - Crystal Structure of the Catalytic Domain of Human Endonuclease V (C140S/C225S/C226A/C228S)
  20. 6ozf (Na: 2) - Crystal Structure of Thermotoga Maritima (Tm) Endonuclease V (D110N) in Complex with A 12MER Dna Containing An Inosine Followed By A Ribo- Adenosine
    Other atoms: Ca (4);
  21. 6ozl (Na: 1) - Crystal Structure of Mus Musculus (Mm) Endonuclease V in Complex with A 23MER Rna Oligo Containing An Inosine After A 2 Min Soak in MN2+
    Other atoms: Mn (4);
  22. 6ozs (Na: 2) - Crystal Structure of Mus Musculus (Mm) Endonuclease V in Complex with A 23MER Rna Oligo Containing An Inosine After A 90 Min Soak in 10 Mm MG2+
    Other atoms: Mg (6);
  23. 6p0c (Na: 1) - Human Dna Ligase 1 Bound to An Adenylated, Hydroxyl Terminated Dna Nick in Edta
  24. 6p0i (Na: 1) - Crystal Structure of Gdp-Bound Human Rala in A Covalent Complex with Aryl Sulfonyl Fluoride Compounds.
    Other atoms: Ca (1); Cl (3);
  25. 6p1n (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Dampnpp
    Other atoms: Mg (2); Cl (2);
  26. 6p1o (Na: 1) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Damp
    Other atoms: Mg (1); Mn (1); Cl (3);
  27. 6p1p (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Dcmpnpp
    Other atoms: Mg (2); Cl (1);
  28. 6p1q (Na: 1) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Dcmp
    Other atoms: Mg (2); Cl (3);
  29. 6p1r (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Incoming Ampnpp
    Other atoms: Mg (2); Cl (3);
  30. 6p1s (Na: 2) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Amp
    Other atoms: Mn (1); Cl (2);
  31. 6p1t (Na: 2) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Bound Cmpcpp
    Other atoms: Mg (2); Cl (3);
  32. 6p1u (Na: 3) - Post-Catalytic Nicked Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Template 8OG and Newly Incorporated Cmp
    Other atoms: Mn (1); Cl (4);
  33. 6p1v (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Undamaged Template Dg and Bound Incoming Dcmpnpp
    Other atoms: Mg (2); Cl (3);
  34. 6p1w (Na: 1) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Mu with 1-Nt Gapped Substrate Containing Undamaged Template Dg and Bound Incoming Cmpcpp
    Other atoms: Mg (2); Cl (4);
  35. 6p2t (Na: 1) - Bshb From Bacillus Subtilis Complexed with Citrate
    Other atoms: Zn (1);
  36. 6p3j (Na: 1) - Crystal Structure of Ligu
    Other atoms: Cl (9); Ca (2);
  37. 6p4d (Na: 1) - Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R
    Other atoms: Cl (4);
  38. 6p4e (Na: 2) - Leishmania Mexicana Cpb in Complex with An Aza-Nitrile Inhibitor
  39. 6p5o (Na: 1) - The Structure of Rat Cytosolic Pepck in Complex with 3- (Carboxymethylthiol)-Picolinic Acid
    Other atoms: Mn (2);
  40. 6p8k (Na: 4) - Escherichia Coli Bacterioferritin Substituted with Zinc Protoporphyrin IX
    Other atoms: Zn (24);
Page generated: Sun Aug 22 09:11:35 2021

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