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Sodium in PDB 6p2t: Bshb From Bacillus Subtilis Complexed with Citrate

Protein crystallography data

The structure of Bshb From Bacillus Subtilis Complexed with Citrate, PDB code: 6p2t was solved by P.D.Cook, C.E.Meloche, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.48 / 1.85
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 98.538, 98.538, 184.877, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 20.5

Other elements in 6p2t:

The structure of Bshb From Bacillus Subtilis Complexed with Citrate also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Bshb From Bacillus Subtilis Complexed with Citrate (pdb code 6p2t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Bshb From Bacillus Subtilis Complexed with Citrate, PDB code: 6p2t:

Sodium binding site 1 out of 1 in 6p2t

Go back to Sodium Binding Sites List in 6p2t
Sodium binding site 1 out of 1 in the Bshb From Bacillus Subtilis Complexed with Citrate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Bshb From Bacillus Subtilis Complexed with Citrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:30.7
occ:1.00
O A:HOH509 2.2 45.8 1.0
O A:SER221 2.8 25.1 1.0
O A:HOH531 2.9 45.6 1.0
O A:ARG223 2.9 27.8 1.0
O A:HOH469 3.0 37.0 1.0
O A:LYS222 3.4 28.4 1.0
C A:ARG223 3.6 30.2 1.0
C A:SER221 3.7 27.8 1.0
C A:LYS222 3.7 31.0 1.0
O A:HOH488 3.9 55.0 1.0
CA A:MET224 4.1 31.4 1.0
N A:MET224 4.2 28.6 1.0
CA A:LYS222 4.2 28.1 1.0
N A:ARG223 4.3 28.5 1.0
N A:LYS222 4.4 24.4 1.0
CB A:SER221 4.4 29.8 1.0
O A:HOH410 4.4 39.3 1.0
N A:LEU225 4.5 28.6 1.0
CA A:ARG223 4.6 29.9 1.0
OG A:SER221 4.6 27.2 1.0
CA A:SER221 4.6 25.7 1.0
C A:MET224 4.7 27.9 1.0
OD2 A:ASP158 4.7 25.6 1.0
CG A:LEU225 4.9 32.8 1.0

Reference:

R.L.Woodward, M.M.Castleman, C.E.Meloche, M.E.Karpen, C.G.Carlson, W.H.Yobi, J.C.Jepsen, B.W.Lewis, B.N.Zarnosky, P.D.Cook. X-Ray Crystallographic Structure of Bshb, the Zinc-Dependent Deacetylase Involved in Bacillithiol Biosynthesis. Protein Sci. 2019.
ISSN: ESSN 1469-896X
PubMed: 31867856
DOI: 10.1002/PRO.3808
Page generated: Tue Dec 15 12:44:30 2020

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