Sodium in PDB 6oz3: Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH057 GP120 Core

The structure of Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH057 GP120 Core, PDB code: 6oz3 was solved by W.D.Tolbert, M.Pazgier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.03 / 3.15
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	104.754, 110.454, 152.165, 90.00, 90.00, 90.00
R / Rfree (%)	24.3 / 29.5

The binding sites of Sodium atom in the Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH057 GP120 Core (pdb code 6oz3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH057 GP120 Core, PDB code: 6oz3:

Sodium binding site 1 out of 1 in the Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH057 GP120 Core


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH057 GP120 Core within 5.0Å range: probe atom residue distance (Å) B Occ H:Na301 b:54.9 occ:0.50 ND1 H:HIS1 2.2 0.4 1.0 N H:HIS1 2.3 0.8 1.0 O H:HIS1 2.4 0.6 1.0 CE1 H:HIS1 2.9 0.5 1.0 C H:HIS1 3.0 0.2 1.0 CA H:HIS1 3.0 0.9 1.0 CG H:HIS1 3.1 0.8 1.0 CB H:HIS1 3.6 0.9 1.0 NE2 H:HIS1 3.9 0.5 1.0 CD2 H:HIS1 4.0 0.9 1.0 N H:VAL2 4.1 84.8 1.0 CA H:GLY26 4.3 0.6 1.0 O H:GLY26 4.6 93.0 1.0 CA H:VAL2 4.9 90.7 1.0 C H:GLY26 5.0 92.9 1.0

W.D.Tolbert, M.Pazgier. Crystal Structure of Broadly Neutralizing Antibody N49P9.1 Fab in Complex with Hiv-1 Clade A/E Strain 93TH)57 GP120 Core To Be Published.