Sodium in PDB 6ou3: Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain

The structure of Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain, PDB code: 6ou3 was solved by S.E.Hill, M.S.Kwon, R.L.Lieberman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.54 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.353, 57.241, 90.474, 90.00, 90.00, 90.00
R / Rfree (%)	15 / 17.3

The binding sites of Sodium atom in the Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain (pdb code 6ou3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain, PDB code: 6ou3:

Sodium binding site 1 out of 1 in the Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:11.7 occ:1.00 O A:HOH735 2.1 12.8 1.0 O A:ILE477 2.1 9.2 1.0 OD2 A:ASP380 2.1 12.2 1.0 O A:HOH778 2.2 10.2 1.0 O A:HOH729 2.2 13.8 1.0 O A:HOH720 2.2 10.1 1.0 CG A:ASP380 3.1 12.9 1.0 H A:ILE477 3.2 15.4 1.0 C A:ILE477 3.3 13.0 1.0 OD1 A:ASP380 3.4 17.0 1.0 HB A:ILE477 3.7 13.6 1.0 N A:ILE477 3.8 12.8 1.0 HA A:SER478 3.9 19.2 1.0 O A:HOH716 3.9 15.6 1.0 CA A:ILE477 4.0 8.8 1.0 O A:HOH790 4.0 25.8 1.0 O A:ALA429 4.1 13.7 1.0 O A:LEU381 4.2 11.7 1.0 O A:HOH853 4.3 19.2 1.0 N A:SER478 4.3 9.8 1.0 O A:HOH879 4.3 23.1 1.0 CB A:ILE477 4.3 11.3 1.0 HB2 A:ALA382 4.5 13.7 1.0 CB A:ASP380 4.5 12.4 1.0 HG22 A:ILE477 4.5 20.4 1.0 OD1 A:ASN428 4.5 14.2 1.0 CA A:SER478 4.5 16.0 1.0 HA A:MET476 4.5 11.7 1.0 HB3 A:ASP380 4.6 14.9 1.0 HG2 A:MET476 4.7 28.1 1.0 HB3 A:PHE430 4.7 15.8 1.0 HB2 A:SER478 4.8 22.0 1.0 HB2 A:ASP380 4.9 14.9 1.0 HD12 A:ILE391 4.9 19.8 1.0 C A:MET476 4.9 14.3 1.0 HA A:ILE477 4.9 10.6 1.0 SD A:MET476 4.9 28.7 1.0 HA A:PHE430 4.9 11.6 1.0 HA2 A:GLY326 5.0 19.4 1.0

S.E.Hill, M.S.Kwon, M.D.Martin, A.Suntharalingam, A.Hazel, C.A.Dickey, J.C.Gumbart, R.L.Lieberman. Calcium-Depleted Variants of the Myocilin Olfactomedin Domain Reveal A Stable Alternative Conformation with An Unwound Helix To Be Published.