Sodium in PDB 6ovl: 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp

Enzymatic activity of 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp

All present enzymatic activity of 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp:
1.1.1.79; 1.1.1.81;

Protein crystallography data

The structure of 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp, PDB code: 6ovl was solved by N.Vuksanovic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	36.73 / 2.10
*Space group*	P 6₅ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	158.820, 158.820, 96.710, 90.00, 90.00, 120.00
*R / R_free (%)*	16.4 / 18.4

Other elements in 6ovl:

The structure of 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp also contains other interesting chemical elements:

Potassium

(K)

1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp (pdb code 6ovl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp, PDB code: 6ovl:

Sodium binding site 1 out of 1 in 6ovl

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Sodium Binding Sites List in 6ovl

Sodium binding site 1 out of 1 in the 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na406 b:73.2 occ:1.00	HE22	A:GLN13	2.4	82.9	1.0
	HH12	A:ARG20	2.7	68.3	1.0
	HH22	A:ARG20	3.2	81.5	1.0
	NE2	A:GLN13	3.3	69.1	1.0
	NH1	A:ARG20	3.6	56.9	1.0
	HE21	A:GLN13	3.7	82.9	1.0
	NH2	A:ARG20	3.9	67.9	1.0
	HG21	A:ILE16	4.0	73.4	1.0
	HH11	A:ARG20	4.1	68.3	1.0
	CD	A:GLN13	4.2	67.8	1.0
	OE1	A:GLN13	4.2	68.8	1.0
	CZ	A:ARG20	4.2	61.2	1.0
	O	A:HOH650	4.4	42.7	1.0
	HD13	A:ILE16	4.4	86.6	1.0
	HH21	A:ARG20	4.6	81.5	1.0
	HD12	A:ILE16	4.9	86.6	1.0
	CG2	A:ILE16	4.9	61.2	1.0

Reference:

N.Vuksanovic, N.Vuksanovic. N/A N/A.

Page generated: Tue Oct 8 12:38:10 2024

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