Sodium in PDB 6osr: Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)

The structure of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1), PDB code: 6osr was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.74 / 2.55
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	73.100, 113.970, 246.380, 90.00, 91.44, 90.00
R / Rfree (%)	19.1 / 24.6

The structure of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) (pdb code 6osr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1), PDB code: 6osr:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Na606 b:44.9 occ:1.00 OD1 C:ASP96 2.8 74.9 1.0 O C:HOH720 3.0 42.9 1.0 O C:HOH740 3.0 46.0 1.0 O C:PHE97 3.1 37.0 1.0 CG C:ASP96 4.0 62.9 1.0 C C:PHE97 4.0 33.7 1.0 N C:PHE97 4.1 23.1 1.0 O C:HOH785 4.2 37.0 1.0 OD2 C:ASP96 4.5 75.6 1.0 CB C:TYR100 4.5 22.6 1.0 CA C:PHE97 4.6 26.1 1.0 OE1 C:GLU101 4.7 43.4 1.0 CB C:PHE97 4.8 27.7 1.0 OE2 C:GLU101 4.9 34.2 1.0 CB C:ASN400 4.9 34.7 1.0 N C:ILE98 4.9 26.9 1.0 C C:ASP96 5.0 25.9 1.0 CA C:ILE98 5.0 28.0 1.0 N C:TYR100 5.0 24.4 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) within 5.0Å range: probe atom residue distance (Å) B Occ E:Na605 b:47.0 occ:1.00 O E:HOH768 2.9 38.7 1.0 O E:PHE97 3.2 35.2 1.0 OD1 E:ASP96 3.2 87.7 1.0 CG E:ASP96 3.9 74.8 1.0 OD2 E:ASP96 3.9 86.8 1.0 C E:PHE97 3.9 32.0 1.0 O E:HOH771 4.3 30.5 1.0 N E:PHE97 4.3 22.8 1.0 CB E:TYR100 4.7 22.9 1.0 CB E:ASN400 4.7 25.2 1.0 CA E:PHE97 4.7 29.8 1.0 N E:ILE98 4.7 31.3 1.0 CA E:ILE98 4.7 21.9 1.0 OE1 E:GLU101 4.8 47.1 1.0 N E:ASP99 4.9 22.1 1.0 N E:TYR100 4.9 23.0 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) within 5.0Å range: probe atom residue distance (Å) B Occ F:Na605 b:40.9 occ:1.00 O F:PHE97 2.9 32.0 1.0 O F:HOH719 3.0 41.7 1.0 O F:HOH774 3.0 37.7 1.0 OD1 F:ASP96 3.2 70.3 1.0 C F:PHE97 3.8 36.5 1.0 CG F:ASP96 4.1 60.4 1.0 O F:HOH756 4.1 42.4 1.0 N F:PHE97 4.2 36.8 1.0 OD2 F:ASP96 4.3 67.4 1.0 CB F:TYR100 4.4 24.8 1.0 CA F:PHE97 4.5 35.3 1.0 OE2 F:GLU101 4.7 44.6 1.0 O F:HOH786 4.7 48.6 1.0 CB F:PHE97 4.7 36.4 1.0 OE1 F:GLU101 4.8 42.8 1.0 N F:ILE98 4.8 33.5 1.0 N F:TYR100 4.9 22.5 1.0 CA F:ILE98 4.9 29.4 1.0 CB F:ASN400 5.0 32.9 1.0

D.G.Conrady, J.K.Yano, B.Calhoun, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) To Be Published.