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Sodium in PDB, part 210 (files: 8361-8400), PDB 6o5x-6oze

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 8361-8400 (PDB 6o5x-6oze).
  1. 6o5x (Na: 1) - Crystal Structure of Multi-Drug Resistant Hiv-1 Protease Pr-S17 with Substrate Analog Ca-P2
    Other atoms: Cl (12);
  2. 6o6a (Na: 4) - Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Ligand-Free State
  3. 6o6j (Na: 2) - Crystal Structure of the Ljcastor Gating Ring in the CA2+ and Na+ Condition
    Other atoms: Mg (1); Ca (3);
  4. 6o6r (Na: 8) - Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Amtb-Bound State
  5. 6o72 (Na: 8) - Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State
    Other atoms: F (24);
  6. 6o7c (Na: 1) - Crystal Structure of the Ljcastor Gating Ring in the CA2+ and K+ State
    Other atoms: Mg (1); K (1); Ca (3);
  7. 6o7s (Na: 2) - Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii in the Indigo Carmine Oxidized State
    Other atoms: Mo (2); Fe (28);
  8. 6o8g (Na: 1) - Crystal Structure of Uvrb Bound to Fully Duplex Dna
    Other atoms: Cl (1);
  9. 6o93 (Na: 1) - D-Alanyl Transferase Dltd From Enterococcus Faecalis
    Other atoms: Cl (3);
  10. 6o9h (Na: 2) - Mouse Ecd with FAB1
  11. 6obh (Na: 6) - Structure of Hiv-1 Ca 1/2-Hexamer
  12. 6oe6 (Na: 2) - Structure of A Uncharacterized Protein From Leptospira Interrogans Serogroup Icterohaemorrhagiae Serovar Copenhageni (Strain Fiocruz L1- 130)
  13. 6of5 (Na: 5) - The Crystal Structure of Dodecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase
    Other atoms: Zn (4); Fe (4);
  14. 6ofd (Na: 5) - The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase
    Other atoms: Zn (4); Fe (4); Cl (1);
  15. 6ok1 (Na: 2) - LTP2-CHSH2(DUF35) Aldolase
    Other atoms: Zn (2); Cl (7);
  16. 6okf (Na: 2) - Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, Fabb, and C16-Crypto Acyl Carrier Protein, Acpp
  17. 6okg (Na: 1) - Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, Fabf, and C16-Crypto Acyl Carrier Protein, Acpp
  18. 6ol8 (Na: 2) - Crystal Structure of Ndm-12 Metallo-Beta-Lactamase in Complex with Hydrolyzed Ampicillin
    Other atoms: Cl (5); Zn (4);
  19. 6ome (Na: 4) - Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx
    Other atoms: Cl (2); Zn (2);
  20. 6omg (Na: 5) - Structure of Mouse CD1D- Glc-Dag (Sn-1 C18:0, Sn-2 C18:1C9)-Inkt Tcr Ternary Complex
  21. 6on9 (Na: 1) - Crystal Structure of the Zig-8-Rig-5 IG1-IG1 Heterodimer, Tetragonal Form
  22. 6ont (Na: 2) - Structure of the Francisella Response Regulator 1452 Receiver Domain
    Other atoms: Ca (1); Cl (1);
  23. 6oog (Na: 1) - Crystal Structure of Triosephosphate Isomerase From Taenia Solium in Complex with 2PG
  24. 6ooi (Na: 8) - Crystal Structure of Triosephosphate Isomerase From Schistosoma Mansoni in Complex with 2PG
    Other atoms: Cl (6);
  25. 6oor (Na: 4) - Structure of 1B1 Bound to Mouse CD1D
  26. 6op6 (Na: 1) - Structure of Vim-20 in the Reduced State
    Other atoms: Zn (3);
  27. 6op8 (Na: 1) - S. Pombe UBC7/U7BR Complex
    Other atoms: Mg (1);
  28. 6oqq (Na: 2) - Legionella Pneumophila Sidj/Saccharomyces Cerevisiae Calmodulin Complex
    Other atoms: Mg (7); Ca (4);
  29. 6orj (Na: 3) - Central Spike of Phikz Phage Tail
    Other atoms: Cl (5);
  30. 6osr (Na: 3) - Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)
    Other atoms: K (2);
  31. 6ou1 (Na: 2) - Crystal Structure of the Computationally-Derived 21-Variant of the Myocilin Olfactomedin Domain
    Other atoms: Ca (2);
  32. 6ou2 (Na: 1) - Crystal Structure of the D478N Variant of the Myocilin Olfactomedin Domain
  33. 6ou3 (Na: 1) - Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain
  34. 6ouv (Na: 2) - 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Deinococcus Radiodurans with Methylacetylphosphonate (Map) Bound
    Other atoms: Mg (2);
  35. 6ouw (Na: 1) - 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Deinococcus Radiodurans with Enamine Intermediate Bound
    Other atoms: Mg (1);
  36. 6ovl (Na: 1) - 2.1 Angstrom Structure of Wild Type Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp
    Other atoms: K (1);
  37. 6ovn (Na: 1) - Crystal Structure of the Unliganded Clone 2 Tcr
    Other atoms: Cl (3);
  38. 6ovt (Na: 1) - Crystal Structure of Ilvd From Mycobacterium Tuberculosis
    Other atoms: Mg (12); Fe (8);
  39. 6oxn (Na: 3) - 2.6 Angstrom Structure of W45F/H46S Glyoxylate/Hydroxypyruvate Reductase A From Escherichia Coli in Complex with Glyoxylate and Nadp
  40. 6oze (Na: 2) - Crystal Structure of the Catalytic Domain of Human Endonuclease V (C140S/C225S/C226A/C228S)
Page generated: Tue Dec 1 10:46:53 2020

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