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Sodium in PDB 6nxr: Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13D Mutant

Enzymatic activity of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13D Mutant

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13D Mutant:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13D Mutant, PDB code: 6nxr was solved by P.Jimenez-Sandoval, C.Diaz-Quezada, A.Torres-Larios, L.G.Brieba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.00 / 1.30
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 38.682, 163.850, 98.093, 90.00, 90.00, 90.00
R / Rfree (%) 13.1 / 15.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13D Mutant (pdb code 6nxr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13D Mutant, PDB code: 6nxr:

Sodium binding site 1 out of 1 in 6nxr

Go back to Sodium Binding Sites List in 6nxr
Sodium binding site 1 out of 1 in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13D Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:13.4
occ:1.00
 O A:VAL227 2.3 11.7 1.0
O A:GLY222 2.4 13.8 1.0
O A:GLN224 2.4 13.0 1.0
O A:HOH639 2.4 17.7 1.0
O A:HOH633 2.5 19.3 1.0
O A:HOH560 2.5 19.0 1.0
C A:VAL227 3.5 10.0 1.0
C A:GLY222 3.5 13.5 1.0
C A:GLN224 3.6 12.5 1.0
C A:GLY223 3.9 15.0 1.0
N A:GLN224 3.9 13.5 1.0
N A:VAL227 4.1 9.9 1.0
CA A:GLY223 4.2 15.2 1.0
CA A:VAL227 4.2 10.0 1.0
N A:GLY223 4.3 13.5 1.0
O A:HOH649 4.3 23.8 1.0
O A:GLY223 4.3 17.1 1.0
O A:HOH696 4.4 27.3 1.0
CA A:GLN224 4.4 13.3 1.0
O A:ALA225 4.4 13.0 1.0
C A:ALA225 4.5 11.6 1.0
N A:ASP228 4.5 9.0 1.0
N A:ALA225 4.5 13.2 1.0
O A:HOH702 4.5 46.6 1.0
CB A:VAL227 4.5 10.8 1.0
CA A:GLY222 4.5 13.7 1.0
O A:HOH576 4.6 21.1 1.0
CA A:ALA225 4.7 12.4 1.0
CA A:ASP228 4.7 9.4 1.0
OD1 A:ASP228 4.7 14.8 1.0
O A:HOH449 4.8 40.1 1.0
CE1 A:PHE5 4.9 11.9 1.0
N A:ASP226 4.9 10.4 1.0
O A:LEU221 4.9 14.5 1.0

Reference:

P.Jimenez-Sandoval, C.Diaz-Quezada, A.Torres-Larios, L.G.Brieba. Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant To Be Published.
Page generated: Mon Aug 18 06:20:41 2025

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