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Sodium in PDB 6ns0: Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin

Enzymatic activity of Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin

All present enzymatic activity of Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin:
6.1.1.6;

Protein crystallography data

The structure of Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin, PDB code: 6ns0 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.32 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 96.580, 57.510, 139.550, 90.00, 97.00, 90.00
R / Rfree (%) 16.4 / 20.7

Other elements in 6ns0:

The structure of Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin (pdb code 6ns0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin, PDB code: 6ns0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 6ns0

Go back to Sodium Binding Sites List in 6ns0
Sodium binding site 1 out of 2 in the Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na623

b:53.3
occ:1.00
 O A:LYS463 2.3 43.5 1.0
O A:HOH885 2.4 47.6 1.0
O A:ASN466 2.5 46.0 1.0
O A:SER469 2.5 59.4 1.0
OG A:SER469 2.7 54.6 1.0
C A:LYS463 3.3 43.4 1.0
C A:SER469 3.4 59.5 1.0
C A:ASN466 3.6 43.6 1.0
CB A:SER469 3.8 45.2 1.0
O A:HOH957 3.8 70.1 1.0
CA A:ALA464 3.9 35.8 1.0
CA A:SER469 3.9 52.2 1.0
N A:SER469 3.9 56.8 1.0
N A:ALA464 4.0 36.2 1.0
N A:ASN466 4.1 45.3 1.0
C A:ALA464 4.1 43.0 1.0
CA A:ASN466 4.2 43.4 1.0
O A:ALA464 4.2 34.8 1.0
CA A:LYS463 4.3 38.3 1.0
CB A:ASN466 4.4 55.1 1.0
CB A:LYS463 4.4 41.0 1.0
N A:GLU470 4.6 57.5 1.0
N A:PRO467 4.6 46.1 1.0
N A:LEU465 4.7 43.7 1.0
O A:HOH717 4.7 44.9 1.0
CA A:PRO467 4.8 49.5 1.0
O A:HOH752 4.8 56.4 1.0
C A:PRO467 4.9 49.7 1.0
C A:GLU470 4.9 47.3 1.0
CG A:ASN466 4.9 59.4 1.0
CA A:GLU470 5.0 59.9 1.0

Sodium binding site 2 out of 2 in 6ns0

Go back to Sodium Binding Sites List in 6ns0
Sodium binding site 2 out of 2 in the Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis Complexed with L-Lysine and Cladosporin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na624

b:98.1
occ:1.00
 O A:HOH926 2.4 70.8 1.0
O A:GLU368 2.8 53.8 1.0
O A:HOH948 2.9 63.1 1.0
O A:HOH728 3.1 59.4 1.0
O A:THR371 3.8 50.5 1.0
C A:GLU368 4.0 54.3 1.0
CA A:GLU368 4.7 45.1 1.0
CG A:GLU368 4.9 61.6 1.0
C A:THR371 4.9 46.5 1.0
O A:LEU373 5.0 47.2 1.0
CA A:SER372 5.0 60.8 1.0

Reference:

D.M.Dranow, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Lysyl-Trna Synthetase From Chlamydia Trachomatis with Complexed with L-Lysine and Cladosporin To Be Published.
Page generated: Mon Aug 18 06:19:11 2025

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