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Sodium in PDB 6nxy: Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant

Enzymatic activity of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant, PDB code: 6nxy was solved by P.Jimenez-Sandoval, C.Diaz-Quezada, A.Torres-Larios, L.G.Brieba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.87 / 1.05
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 38.993, 163.486, 97.744, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 17.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant (pdb code 6nxy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant, PDB code: 6nxy:

Sodium binding site 1 out of 1 in 6nxy

Go back to Sodium Binding Sites List in 6nxy
Sodium binding site 1 out of 1 in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:8.7
occ:1.00
 O A:VAL227 2.3 6.8 1.0
O A:HOH639 2.4 11.0 1.0
O A:GLN224 2.4 7.2 1.0
O A:GLY222 2.4 8.9 1.0
O A:HOH638 2.5 13.9 1.0
O A:HOH514 2.5 12.1 1.0
C A:VAL227 3.5 5.0 1.0
C A:GLN224 3.6 6.2 1.0
C A:GLY222 3.6 7.9 1.0
N A:GLN224 4.0 6.7 1.0
C A:GLY223 4.0 8.0 1.0
N A:VAL227 4.2 5.1 1.0
CA A:GLY223 4.2 8.4 1.0
O A:HOH642 4.2 13.3 1.0
O A:HOH684 4.3 16.8 1.0
CA A:VAL227 4.3 5.3 1.0
N A:GLY223 4.3 7.5 1.0
CA A:GLN224 4.4 7.4 1.0
O A:GLY223 4.4 9.9 1.0
O A:ALA225 4.4 7.9 1.0
C A:ALA225 4.4 6.0 1.0
N A:ASP228 4.5 4.5 1.0
N A:ALA225 4.5 6.8 1.0
CA A:GLY222 4.6 7.6 1.0
O A:HOH680 4.6 30.6 1.0
O A:HOH619 4.6 14.4 1.0
CB A:VAL227 4.6 5.8 1.0
CA A:ALA225 4.6 7.3 1.0
CA A:ASP228 4.7 5.2 1.0
O A:LEU221 4.8 7.3 1.0
OD1 A:ASP228 4.8 8.7 1.0
CE1 A:PHE5 4.8 7.2 1.0
N A:ASP226 4.9 5.8 1.0
O A:HOH528 5.0 26.4 1.0

Reference:

P.Jimenez-Sandoval, C.Diaz-Quezada, A.Torres-Larios, L.G.Brieba. Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C218D Mutant To Be Published.
Page generated: Mon Aug 18 06:20:59 2025

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