Sodium in PDB 6nxq: Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant

Enzymatic activity of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant, PDB code: 6nxq was solved by P.Jimenez-Sandoval, C.Diaz-Quezada, A.Torres-Larios, L.G.Brieba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	62.47 / 1.96
*Space group*	C 2 2 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	38.468, 162.683, 97.233, 90.00, 90.00, 90.00
*R / R_free (%)*	16.9 / 20

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant (pdb code 6nxq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant, PDB code: 6nxq:

Sodium binding site 1 out of 1 in 6nxq

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Sodium Binding Sites List in 6nxq

Sodium binding site 1 out of 1 in the Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na301 b:23.3 occ:1.00	O	A:VAL227	2.3	18.3	1.0
	O	A:HOH545	2.4	24.8	1.0
	O	A:GLN224	2.4	18.9	1.0
	O	A:HOH498	2.5	33.2	1.0
	O	A:GLY222	2.5	22.8	1.0
	O	A:HOH540	2.5	31.8	1.0
	C	A:VAL227	3.4	16.6	1.0
	C	A:GLY222	3.6	20.8	1.0
	C	A:GLN224	3.6	21.1	1.0
	N	A:GLN224	3.9	22.5	1.0
	C	A:GLY223	4.0	23.1	1.0
	N	A:VAL227	4.0	17.0	1.0
	CA	A:VAL227	4.2	16.5	1.0
	CA	A:GLY223	4.3	23.5	1.0
	N	A:GLY223	4.3	22.4	1.0
	O	A:GLY223	4.4	22.4	1.0
	CA	A:GLN224	4.4	22.6	1.0
	O	A:ALA225	4.4	18.3	1.0
	N	A:ASP228	4.4	15.4	1.0
	C	A:ALA225	4.5	19.0	1.0
	CB	A:VAL227	4.5	19.3	1.0
	N	A:ALA225	4.6	21.7	1.0
	CA	A:GLY222	4.6	21.4	1.0
	CA	A:ASP228	4.6	15.7	1.0
	CA	A:ALA225	4.7	21.3	1.0
	OD1	A:ASP228	4.7	16.9	1.0
	CE1	A:PHE5	4.8	17.3	1.0
	N	A:ASP226	4.9	17.9	1.0
	O	A:LEU221	5.0	19.2	1.0

Reference:

P.Jimenez-Sandoval, C.Diaz-Quezada, A.Torres-Larios, L.G.Brieba. Crystal Structure of Arabidopsis Thaliana Cytosolic Triosephosphate Isomerase C13A Mutant To Be Published.

Page generated: Mon Aug 18 06:20:24 2025

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