Sodium in PDB 6nq4: Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330

The structure of Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330, PDB code: 6nq4 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.06 / 1.45
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	122.430, 60.120, 86.840, 90.00, 104.28, 90.00
R / Rfree (%)	14.2 / 18.4

The binding sites of Sodium atom in the Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330 (pdb code 6nq4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330, PDB code: 6nq4:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na306 b:20.1 occ:1.00 O A:TRP23 2.4 20.1 1.0 OD1 A:ASP225 2.4 24.3 1.0 OD2 A:ASP21 2.4 24.1 1.0 O1 A:PO4305 2.4 19.6 0.8 O A:HOH544 2.5 23.5 1.0 O A:HOH445 2.5 21.4 1.0 CG A:ASP21 3.2 23.2 1.0 OD1 A:ASP21 3.4 22.6 1.0 O A:HOH576 3.4 23.2 1.0 CG A:ASP225 3.5 23.1 1.0 C A:TRP23 3.5 18.0 1.0 O A:HOH424 3.8 19.0 1.0 P A:PO4305 4.0 18.2 0.8 OD2 A:ASP225 4.1 23.3 1.0 OD2 A:ASP230 4.2 21.2 1.0 CA A:TRP23 4.4 15.9 1.0 O3 A:PO4305 4.5 21.4 0.8 N A:GLY24 4.5 17.5 1.0 CB A:TRP23 4.5 16.3 1.0 CA A:GLY24 4.5 19.6 1.0 O A:HOH437 4.6 20.8 1.0 O A:HOH486 4.6 21.8 1.0 N A:ASP225 4.6 19.7 1.0 N A:TRP23 4.6 15.6 1.0 CB A:ASP21 4.6 21.5 1.0 CB A:ASP225 4.7 22.2 1.0 O2 A:PO4305 4.7 16.1 0.8 N A:GLY226 4.7 21.9 1.0 O4 A:PO4305 4.8 17.8 0.8 OE1 A:GLU166 4.8 21.4 1.0 CG2 A:VAL25 4.9 23.1 1.0 CA A:ASP225 4.9 20.2 1.0 C A:ASP225 4.9 21.1 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na304 b:16.6 occ:1.00 O B:TRP23 2.2 17.5 1.0 OD1 B:ASP225 2.3 20.7 1.0 O4 B:PO4303 2.3 18.1 0.6 OD1 B:ASP21 2.4 17.5 0.4 O B:HOH507 2.4 18.0 1.0 OD2 B:ASP21 2.4 19.4 0.6 O B:HOH655 2.5 20.1 1.0 CG B:ASP21 3.2 18.1 0.6 OD1 B:ASP21 3.3 17.7 0.6 CG B:ASP225 3.4 21.1 1.0 C B:TRP23 3.4 15.1 1.0 CG B:ASP21 3.5 16.3 0.4 O B:HOH600 3.6 20.6 1.0 OD2 B:ASP225 3.8 26.5 1.0 P B:PO4303 3.8 16.6 0.6 OD2 B:ASP230 4.2 18.3 1.0 CB B:TRP23 4.2 15.0 1.0 CA B:TRP23 4.2 15.1 1.0 OD2 B:ASP21 4.3 17.1 0.4 N B:GLY24 4.4 15.0 1.0 CB B:ASP21 4.4 15.0 0.4 O1 B:PO4303 4.4 20.1 0.6 N B:TRP23 4.4 15.2 1.0 O B:HOH460 4.5 20.6 1.0 CA B:GLY24 4.5 17.0 1.0 O2 B:PO4303 4.5 15.2 0.6 CB B:ASP21 4.5 16.8 0.6 N B:ASP225 4.6 14.8 1.0 O3 B:PO4303 4.6 12.2 0.6 CB B:ASP225 4.6 17.6 1.0 O B:HOH456 4.6 24.0 1.0 O B:HOH601 4.7 18.5 1.0 N B:GLY226 4.9 16.7 1.0 CG2 B:VAL25 4.9 18.0 1.0 CA B:ASP225 4.9 16.0 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na305 b:20.8 occ:1.00 O B:HOH421 2.7 35.8 1.0 O B:GLY94 2.8 17.7 1.0 O B:ILE91 2.8 14.9 1.0 O B:ALA92 3.1 18.3 1.0 O B:PRO95 3.3 19.1 1.0 C B:ALA92 3.5 14.8 1.0 O B:HOH492 3.5 33.9 1.0 C B:PRO95 3.6 17.1 1.0 C B:GLY94 3.7 17.1 1.0 CA B:ARG96 3.7 20.9 1.0 CG1 B:VAL115 3.7 25.5 1.0 N B:ARG96 3.7 18.6 1.0 CA B:ALA92 3.8 14.2 1.0 C B:ILE91 3.9 14.3 1.0 O B:HOH515 4.0 16.9 1.0 N B:GLY94 4.1 15.8 1.0 N B:ALA92 4.4 13.5 1.0 O B:ASP114 4.4 33.1 1.0 N B:GLU93 4.4 14.7 1.0 CA B:GLY94 4.5 16.3 1.0 N B:PRO95 4.5 17.0 1.0 CB B:ARG96 4.5 27.2 1.0 CA B:PRO95 4.5 16.8 1.0 O B:HOH634 4.5 51.4 1.0 C B:GLU93 4.6 15.2 1.0 O B:HOH650 4.7 53.8 1.0 C B:ARG96 4.8 17.4 1.0 CD1 B:ILE98 4.8 21.6 1.0 CB B:VAL115 4.9 24.5 1.0 CA B:GLU93 4.9 14.6 1.0 O B:ARG96 5.0 18.6 1.0

J.Abendroth, D.M.Dranow, B.Sankaran, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of A Hydrolase, Haloacid Dehalogenase-Like Family From Brucella Suis 1330 To Be Published.