Sodium in PDB 6nje: Crystal Structure of the Motor Domain of Human Kinesin Family Member 22

Protein crystallography data

The structure of Crystal Structure of the Motor Domain of Human Kinesin Family Member 22, PDB code: 6nje was solved by B.C.Walker, H.Zhu, W.Tempel, C.H.Arrowsmith, A.M.Edwards, H.Park, J.C.Cochran, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.48 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.530, 58.730, 116.453, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 25.8

Other elements in 6nje:

The structure of Crystal Structure of the Motor Domain of Human Kinesin Family Member 22 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Motor Domain of Human Kinesin Family Member 22 (pdb code 6nje). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Motor Domain of Human Kinesin Family Member 22, PDB code: 6nje:

Sodium binding site 1 out of 1 in 6nje

Go back to Sodium Binding Sites List in 6nje
Sodium binding site 1 out of 1 in the Crystal Structure of the Motor Domain of Human Kinesin Family Member 22


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Motor Domain of Human Kinesin Family Member 22 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na806

b:59.8
occ:1.00
O A:LEU35 2.4 56.5 1.0
O A:PHE37 2.8 59.8 1.0
O A:GLY39 2.8 55.3 1.0
O A:GLN38 3.0 63.3 1.0
O A:TYR36 3.5 55.2 1.0
C A:LEU35 3.5 56.5 1.0
C A:GLN38 3.6 62.7 1.0
C A:PHE37 3.7 59.2 1.0
C A:GLY39 3.8 56.6 1.0
C A:TYR36 3.9 54.3 1.0
N A:GLY39 4.1 57.6 1.0
CA A:GLY39 4.2 56.2 1.0
N A:LEU35 4.3 56.2 1.0
N A:PHE37 4.4 50.2 1.0
CA A:LEU35 4.4 55.2 1.0
N A:GLN38 4.4 57.9 1.0
N A:TYR36 4.4 50.6 1.0
CA A:PHE37 4.5 49.9 1.0
CA A:TYR36 4.5 49.3 1.0
CA A:GLN38 4.5 58.1 1.0
CB A:LEU35 4.7 55.1 1.0
O A:PRO40 4.9 45.7 1.0
N A:PRO40 5.0 51.5 1.0

Reference:

B.C.Walker, H.Zhu, W.Tempel, C.H.Arrowsmith, A.M.Edwards, H.Park, Structural Genomics Consortium (Sgc). Crystal Structure of the Motor Domain of Human Kinesin Family Member 22 To Be Published.
Page generated: Tue Dec 15 12:39:02 2020

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