Sodium in PDB, part 119 (files: 4721-4760),
PDB 4pd8-4pp4
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 4721-4760 (PDB 4pd8-4pp4).
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4pd8 (Na: 1) - Structure of Vccnt-7C8C Bound to Pyrrolo-Cytidine
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4pd9 (Na: 1) - Structure of Vccnt-7C8C Bound to Adenosine
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4pda (Na: 1) - Structure of Vccnt-7C8C Bound to Cytidine
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4pdl (Na: 1) - Structure of K+ Selective Nak Mutant in Caesium
Other atoms:
Cs (5);
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4pdr (Na: 2) - Crystal Structure of A K+ Selective Nak Mutant in Barium and Sodium
Other atoms:
Ba (6);
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4pf4 (Na: 2) - 1.1A X-Ray Structure of the Apo Catalytic Domain of Death-Associated Protein Kinase 1, Aa 1-277
Other atoms:
Mg (1);
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4pfi (Na: 1) - Crystal Structure of A Trap Periplasmic Solute Binding Protein From Marinobacter Aquaeolei VT8 (MAQU_2829, Target Efi-510133), Apo Open Structure
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4pfm (Na: 2) - Shewanella Benthica Dhdps with Lysine and Pyruvate
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4pfz (Na: 2) - X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis
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4pgq (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with G in the Template Base Paired with Incoming Non-Hydrolyzable Ttp
Other atoms:
Mg (2);
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4pgx (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with G in the Template Base Paired with Incoming Non-Hydrolyzable Ttp and Manganese
Other atoms:
Mn (2);
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4pgy (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A Gt at N-1 Position and Gc at N Position
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4ph5 (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A Ac at N-1 Position and Gc at N Position
Other atoms:
Mg (2);
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4pha (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with A in the Template Base Paired with Incoming Non-Hydrolyzable Ctp
Other atoms:
Mg (2);
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4phd (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with A in the Template Base Paired with Incoming Non-Hydrolyzable Ctp and Manganese
Other atoms:
Mn (2);
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4phe (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with T in the Template Base Paired with Incoming Non-Hydrolyzable Gtp
Other atoms:
Mg (2);
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4phi (Na: 6) - Crystal Structure of Hewl with Hexatungstotellurate(VI)
Other atoms:
W (48);
Te (8);
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4php (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with T in the Template Base Paired with Incoming Non-Hydrolyzable Gtp and Manganese
Other atoms:
Mn (2);
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4pig (Na: 1) - Crystal Structure of the Ubiquitin K11S Mutant
Other atoms:
Cl (8);
Ca (4);
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4piu (Na: 1) - Crystal Structure of Banana Lectin H84T Mutant
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4pj8 (Na: 1) - Structure of Human MR1-5-Op-Ru in Complex with Human Mait TRBV20 Tcr
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4pj9 (Na: 1) - Structure of Human MR1-5-Op-Ru in Complex with Human Mait TRAJ20 Tcr
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4pje (Na: 2) - Structure of Human MR1-Ac-6-Fp in Complex with Human Mait B-B10 Tcr
Other atoms:
Cl (3);
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4pjh (Na: 4) - Structure of Human MR1-Ac-6-Fp in Complex with Human Mait B-G8 Tcr
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4pji (Na: 1) - Structure of Human MR1-Ac-6-Fp in Complex with Human Mait C-C10 Tcr
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4pk0 (Na: 1) - Crystal Structure of T4 Lysozyme-Peptide in Complex with Teicoplanin- A2-2
Other atoms:
Cl (3);
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4plg (Na: 8) - Crystal Structure of Ancestral Apicomplexan Lactate Dehydrogenase with Oxamate.
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4plh (Na: 2) - Crystal Structure of Ancestral Apicomplexan Malate Dehydrogenase with Oxamate.
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4pme (Na: 1) - Human Transthyretin (Ttr) Complexed with Ferulic Acid and Curcumin.
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4pmf (Na: 1) - Human Transthyretin (Ttr) Complexed with Curcumin
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4pmo (Na: 6) - Crystal Structure of the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C, Monoclinic Crystal Form I
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4pmr (Na: 1) - Crystal Structure of the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C in Complex with Hepes (Monoclinic Crystal Form II)
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4pnc (Na: 1) - E. Coli Methionine Aminopeptidase in Complex with Inhibitor 7-Methoxy- 2-Methylen-3,4-Dihydronaphthalen-1(2H)-One
Other atoms:
Co (3);
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4pnz (Na: 1) - Human Dipeptidyl Peptidase IV/CD26 in Complex with the Long-Acting Inhibitor Omarigliptin (Mk-3102)
Other atoms:
F (6);
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4po9 (Na: 1) - Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br
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4pob (Na: 1) - Crystal Structure of A Thioredoxin RV1471 Ortholog From Mycobacterium Abscessus
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4poc (Na: 1) - Structure of Triosephosphate Isomerase Wild Type Human Enzyme.
Other atoms:
K (2);
Br (2);
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4pod (Na: 1) - Structure of Triosephosphate Isomerase I170V Mutant Human Enzyme.
Other atoms:
K (2);
Br (1);
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4poe (Na: 1) - Urate Oxidase Co-Crystallized with Uric Acid and Azide
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4pp4 (Na: 3) - Minute Virus of Mice Non-Structural Protein-1N-Terminal Nuclease Domain Reveals A Unique ZN2+ Coordination in the Active Site Pocket and Shows A Novel Mode of Dna Recognition at the Origin of Replication
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