Sodium in PDB 4pfz: X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis

The structure of X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis, PDB code: 4pfz was solved by P.S.Horanyi, J.Abendroth, D.Lorimer, T.Edwards, Seattle Structuralgenomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.74 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	137.000, 53.740, 69.750, 90.00, 107.76, 90.00
R / Rfree (%)	19.5 / 23.3

The binding sites of Sodium atom in the X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis (pdb code 4pfz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis, PDB code: 4pfz:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:37.7 occ:1.00 OE2 A:GLU134 2.4 23.5 1.0 OD2 A:ASP163 2.5 18.4 1.0 O A:HOH554 2.9 46.8 1.0 O A:VAL84 3.1 30.4 1.0 OE1 A:GLU132 3.1 34.4 1.0 CD A:GLU134 3.3 22.0 1.0 CG A:ASP163 3.4 21.4 1.0 CB A:ASP163 3.6 17.1 1.0 OE1 A:GLU134 3.6 21.2 1.0 NZ A:LYS180 4.1 26.2 1.0 C A:VAL84 4.2 33.6 1.0 CD A:GLU132 4.3 33.8 1.0 O A:GLY85 4.4 55.0 1.0 CZ A:PHE106 4.4 23.0 1.0 CA A:GLY246 4.5 20.1 1.0 OD1 A:ASP163 4.6 17.2 1.0 CA A:GLY85 4.6 49.8 1.0 CG2 A:THR247 4.7 19.5 1.0 CG A:GLU134 4.7 19.8 1.0 N A:THR247 4.7 19.7 1.0 CB A:GLU132 4.8 18.2 1.0 C A:GLY246 4.8 22.9 1.0 CB A:THR247 4.8 19.8 1.0 CE1 A:PHE106 4.9 26.0 1.0 CB A:ALA83 4.9 20.1 1.0 N A:GLY85 4.9 42.1 1.0 C A:GLY85 5.0 50.6 1.0

Sodium binding site 2 out of 2 in the X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta- Isomerase From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:50.3 occ:1.00 O A:ALA152 2.5 23.1 1.0 O A:HOH490 2.6 41.2 1.0 O A:HOH421 2.8 33.9 1.0 O A:ILE155 3.0 19.8 1.0 O A:HOH592 3.1 51.8 1.0 C A:ALA152 3.4 22.2 1.0 O A:HOH567 3.8 52.0 1.0 CA A:ALA152 3.8 22.6 1.0 CB A:ALA152 3.8 31.8 1.0 CB A:ILE155 3.9 16.3 1.0 C A:ILE155 4.0 20.4 1.0 CG2 A:ILE155 4.2 18.2 1.0 CA A:ILE155 4.4 17.6 1.0 N A:ILE155 4.5 17.1 1.0 N A:GLU153 4.7 24.3 1.0

P.S.Horanyi, J.Abendroth, D.Lorimer, T.Edwards. X-Ray Crystal Structure of 5-Carboxymethyl-2-Hydroxymuconate Delta-Isomerase From Mycobacterium Smegmatis To Be Published.