Atomistry » Sodium » PDB 4pd8-4pp4 » 4po9
Atomistry »
  Sodium »
    PDB 4pd8-4pp4 »
      4po9 »

Sodium in PDB 4po9: Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br

Protein crystallography data

The structure of Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br, PDB code: 4po9 was solved by A.V.Chandran, J.R.Prabu, N.K.Patil, K.Muniyappa, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.74 / 2.75
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 107.090, 107.090, 71.140, 90.00, 90.00, 120.00
R / Rfree (%) 19.7 / 25.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br (pdb code 4po9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br, PDB code: 4po9:

Sodium binding site 1 out of 1 in 4po9

Go back to Sodium Binding Sites List in 4po9
Sodium binding site 1 out of 1 in the Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:37.1
occ:1.00
N A:ASP101 3.5 35.6 1.0
CB A:ASP101 3.9 34.9 1.0
CD2 A:TYR104 4.1 29.3 1.0
O A:ALA99 4.1 29.4 1.0
CA A:LEU100 4.1 33.3 1.0
C A:LEU100 4.3 34.5 1.0
CA A:ASP101 4.3 34.8 1.0
CD1 A:LEU100 4.3 34.6 1.0
CD1 A:LEU78 4.3 27.0 1.0
CG2 A:THR74 4.4 28.3 1.0
O A:ASP101 4.5 33.2 1.0
CE2 A:TYR104 4.7 29.4 1.0
C A:ALA99 4.8 29.6 1.0
C A:ASP101 4.9 33.6 1.0
N A:LEU100 4.9 31.4 1.0

Reference:

A.V.Chandran, J.R.Prabu, A.Nautiyal, K.N.Patil, K.Muniyappa, M.Vijayan. Structural Studies on Mycobacterium Tuberculosis Reca: Molecular Plasticity and Interspecies Variability J.Biosci. V. 40 13 2015.
ISSN: ISSN 0250-4774
PubMed: 25740138
DOI: 10.1007/S12038-014-9497-X
Page generated: Mon Oct 7 17:45:48 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy