Atomistry » Sodium » PDB 4pd5-4poc » 4po9
Atomistry »
  Sodium »
    PDB 4pd5-4poc »
      4po9 »

Sodium in PDB 4po9: Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br

Protein crystallography data

The structure of Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br, PDB code: 4po9 was solved by A.V.Chandran, J.R.Prabu, N.K.Patil, K.Muniyappa, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.74 / 2.75
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 107.090, 107.090, 71.140, 90.00, 90.00, 120.00
R / Rfree (%) 19.7 / 25.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br (pdb code 4po9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br, PDB code: 4po9:

Sodium binding site 1 out of 1 in 4po9

Go back to Sodium Binding Sites List in 4po9
Sodium binding site 1 out of 1 in the Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-Br within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:37.1
occ:1.00
N A:ASP101 3.5 35.6 1.0
CB A:ASP101 3.9 34.9 1.0
CD2 A:TYR104 4.1 29.3 1.0
O A:ALA99 4.1 29.4 1.0
CA A:LEU100 4.1 33.3 1.0
C A:LEU100 4.3 34.5 1.0
CA A:ASP101 4.3 34.8 1.0
CD1 A:LEU100 4.3 34.6 1.0
CD1 A:LEU78 4.3 27.0 1.0
CG2 A:THR74 4.4 28.3 1.0
O A:ASP101 4.5 33.2 1.0
CE2 A:TYR104 4.7 29.4 1.0
C A:ALA99 4.8 29.6 1.0
C A:ASP101 4.9 33.6 1.0
N A:LEU100 4.9 31.4 1.0

Reference:

A.V.Chandran, J.R.Prabu, A.Nautiyal, K.N.Patil, K.Muniyappa, M.Vijayan. Structural Studies on Mycobacterium Tuberculosis Reca: Molecular Plasticity and Interspecies Variability J.Biosci. V. 40 13 2015.
ISSN: ISSN 0250-4774
PubMed: 25740138
DOI: 10.1007/S12038-014-9497-X
Page generated: Tue Dec 15 06:58:33 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy