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Sodium in PDB 4pob: Crystal Structure of A Thioredoxin RV1471 Ortholog From Mycobacterium Abscessus

Protein crystallography data

The structure of Crystal Structure of A Thioredoxin RV1471 Ortholog From Mycobacterium Abscessus, PDB code: 4pob was solved by Seattle Structural Genomics Center For Infectious Disease, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.87 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.500, 47.490, 108.750, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 19.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Thioredoxin RV1471 Ortholog From Mycobacterium Abscessus (pdb code 4pob). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Thioredoxin RV1471 Ortholog From Mycobacterium Abscessus, PDB code: 4pob:

Sodium binding site 1 out of 1 in 4pob

Go back to Sodium Binding Sites List in 4pob
Sodium binding site 1 out of 1 in the Crystal Structure of A Thioredoxin RV1471 Ortholog From Mycobacterium Abscessus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Thioredoxin RV1471 Ortholog From Mycobacterium Abscessus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na201

b:18.8
occ:1.00
OD1 B:ASP63 2.3 18.6 1.0
O A:HOH368 2.3 26.4 1.0
O A:HOH327 2.4 23.3 1.0
OG1 A:THR32 2.4 17.2 1.0
O A:HOH305 2.5 16.3 1.0
CG B:ASP63 3.3 16.9 1.0
CG2 A:THR32 3.5 17.1 1.0
CB A:THR32 3.5 15.9 1.0
OD2 B:ASP63 3.6 19.7 1.0
OD2 A:ASP63 4.1 15.4 1.0
O A:HOH304 4.1 16.9 1.0
CB A:ASP63 4.1 14.2 1.0
OD1 A:ASP61 4.3 13.5 1.0
N A:THR32 4.3 14.0 1.0
OD2 A:ASP61 4.4 13.0 1.0
CG A:ASP63 4.5 15.2 1.0
CA A:THR32 4.5 15.8 1.0
CB B:ASP63 4.7 14.2 1.0
CG A:ASP61 4.8 12.8 1.0
CD1 A:TRP33 4.9 16.3 1.0
O B:ASP63 5.0 13.9 1.0

Reference:

T.E.Edwards, J.Abendroth, J.C.Sacchettini, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of A Thioredoxin RV1471 Ortholog From Mycobacterium Abscessus To Be Published.
Page generated: Tue Dec 15 06:58:33 2020

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