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Sodium in PDB 4piu: Crystal Structure of Banana Lectin H84T Mutant

Protein crystallography data

The structure of Crystal Structure of Banana Lectin H84T Mutant, PDB code: 4piu was solved by J.L.Meagher, J.A.Stuckey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.31 / 1.60
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.108, 63.221, 95.709, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 17.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Banana Lectin H84T Mutant (pdb code 4piu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Banana Lectin H84T Mutant, PDB code: 4piu:

Sodium binding site 1 out of 1 in 4piu

Go back to Sodium Binding Sites List in 4piu
Sodium binding site 1 out of 1 in the Crystal Structure of Banana Lectin H84T Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Banana Lectin H84T Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:57.0
occ:1.00
O A:HOH383 2.3 29.0 1.0
OE2 A:GLU71 2.4 29.4 1.0
OH A:TYR101 2.4 25.6 1.0
CD A:GLU71 3.3 29.2 1.0
CZ A:TYR101 3.5 20.8 1.0
OE1 A:GLU71 3.6 33.9 1.0
CE1 A:TYR101 3.8 17.2 1.0
OG1 A:THR96 3.9 15.1 1.0
CB A:LYS98 3.9 20.4 1.0
CG A:LYS99 4.0 20.2 1.0
CD A:LYS99 4.1 20.9 1.0
CB A:LYS99 4.2 17.6 1.0
CE A:LYS99 4.3 23.9 1.0
N A:LYS99 4.5 17.1 1.0
CG A:LYS98 4.6 22.9 1.0
O A:HOH372 4.7 32.9 1.0
CG A:GLU71 4.7 25.4 1.0
O A:HOH319 4.8 24.8 1.0
CE2 A:TYR101 4.8 17.4 1.0
CG2 A:THR96 4.8 15.5 1.0
C A:LYS98 4.9 18.0 1.0
O A:HOH408 4.9 24.8 1.0
CB A:THR96 4.9 14.3 1.0
CA A:LYS98 4.9 18.5 1.0
CA A:LYS99 4.9 16.4 1.0
NZ A:LYS99 4.9 24.8 1.0

Reference:

M.D.Swanson, D.M.Boudreaux, L.Salmon, J.Chugh, H.C.Winter, J.L.Meagher, S.Andre, P.V.Murphy, S.Oscarson, R.Roy, S.King, M.H.Kaplan, I.J.Goldstein, E.B.Tarbet, B.L.Hurst, D.F.Smee, C.De La Fuente, H.H.Hoffmann, Y.Xue, C.M.Rice, D.Schols, J.V.Garcia, J.A.Stuckey, H.J.Gabius, H.M.Al-Hashimi, D.M.Markovitz. Engineering A Therapeutic Lectin By Uncoupling Mitogenicity From Antiviral Activity. Cell V. 163 746 2015.
ISSN: ISSN 1097-4172
PubMed: 26496612
DOI: 10.1016/J.CELL.2015.09.056
Page generated: Tue Dec 15 06:58:18 2020

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