Sodium in PDB 4pmr: Crystal Structure of the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C in Complex with Hepes (Monoclinic Crystal Form II)

The structure of Crystal Structure of the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C in Complex with Hepes (Monoclinic Crystal Form II), PDB code: 4pmr was solved by M.Bellinzoni, A.Haouz, W.Shepard, P.M.Alzari, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.56 / 1.81
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.980, 62.500, 38.730, 90.00, 109.84, 90.00
R / Rfree (%)	16.9 / 21.4

The binding sites of Sodium atom in the Crystal Structure of the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C in Complex with Hepes (Monoclinic Crystal Form II) (pdb code 4pmr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C in Complex with Hepes (Monoclinic Crystal Form II), PDB code: 4pmr:

Sodium binding site 1 out of 1 in the Crystal Structure of the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C in Complex with Hepes (Monoclinic Crystal Form II)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C in Complex with Hepes (Monoclinic Crystal Form II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:24.2 occ:1.00 OG A:SER115 2.3 15.0 1.0 O A:GLY112 2.4 12.7 1.0 O A:HOH437 2.4 12.0 1.0 O A:HOH451 2.6 26.9 1.0 C A:GLY112 3.3 11.9 1.0 CB A:SER115 3.4 12.5 1.0 CA A:GLY112 3.8 9.0 1.0 N A:SER115 4.0 10.4 1.0 CA A:SER115 4.2 9.7 1.0 N A:ALA116 4.3 9.5 1.0 N A:GLY113 4.5 9.9 1.0 O A:HOH403 4.5 15.4 1.0 O A:HOH503 4.5 27.8 1.0 C A:SER115 4.7 11.9 1.0 N A:ALA114 4.8 9.8 1.0 O A:HOH458 4.9 47.7 0.5 C A:GLY113 4.9 12.7 1.0 CA A:GLY113 4.9 9.7 1.0 O A:HOH449 4.9 9.2 1.0

M.Bellinzoni, A.Haouz, I.Miras, S.Magnet, G.Andre-Leroux, R.Mukherjee, W.Shepard, S.T.Cole, P.M.Alzari. Structural Studies Suggest A Peptidoglycan Hydrolase Function For the Mycobacterium Tuberculosis Tat-Secreted Protein RV2525C. J.Struct.Biol. 2014.
ISSN: ESSN 1095-8657
PubMed: 25260828
DOI: 10.1016/J.JSB.2014.09.003