Sodium in PDB, part 92 (files: 3641-3680),
PDB 4b1a-4bkr
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 3641-3680 (PDB 4b1a-4bkr).
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4b1a (Na: 1) - Crystal Structure of Lysozyme with Keggin Molecule
Other atoms:
Mo (7);
Cl (1);
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4b1l (Na: 1) - Carbohydrate Binding Module CBM66 From Bacillus Subtilis
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4b1m (Na: 4) - Carbohydrate Binding Module CBM66 From Bacillus Subtilis
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4b2h (Na: 2) - Complexes of Dodecin with Flavin and Flavin-Like Ligands
Other atoms:
Mg (1);
Cl (1);
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4b2j (Na: 1) - Complexes of Dodecin with Flavin and Flavin-Like Ligands
Other atoms:
F (1);
Mg (2);
Cl (1);
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4b2k (Na: 1) - Complexes of Dodecin with Flavin and Flavin-Like Ligands
Other atoms:
Mg (2);
Cl (1);
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4b2m (Na: 1) - Complexes of Dodecin with Flavin and Flavin-Like Ligands
Other atoms:
Mg (2);
Cl (1);
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4b30 (Na: 2) - Structure of the Mutant V44A of the Fluorescent Protein Killerred
Other atoms:
Cl (8);
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4b3v (Na: 1) - Crystal Structure of the Rubella Virus Glycoprotein E1 in Its Post-Fusion Form Crystallized in Presence of 20MM of Calcium Acetate
Other atoms:
Ca (3);
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4b52 (Na: 1) - Crystal Structure of Gentlyase, the Neutral Metalloprotease of Paenibacillus Polymyxa
Other atoms:
Zn (2);
Ca (6);
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4b5o (Na: 1) - Crystal Structure of Human Alpha Tubulin Acetyltransferase Catalytic Domain
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4b5p (Na: 2) - Crystal Structure of Human Alpha Tubulin Acetyltransferase Catalytic Domain Q58A Variant
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4b6c (Na: 2) - Structure of the M. Smegmatis Gyrb Atpase Domain in Complex with An Aminopyrazinamide
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4ba1 (Na: 1) - Archaeal Exosome (RRP4-RRP41(D182A)-RRP42) Bound to Inorganic Phosphate
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4ba2 (Na: 1) - Archaeal Exosome (RRP4-RRP41(D182A)-RRP42) Bound to Inorganic Phosphate
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4bad (Na: 2) - Hen Egg-White Lysozyme Structure in Complex with the Europium Tris-Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution.
Other atoms:
Eu (2);
Cl (6);
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4baf (Na: 2) - Hen Egg-White Lysozyme Structure in Complex with the Europium Tris-Hydroxyethyltriazoledipicolinate Complex at 1.51 A Resolution.
Other atoms:
Eu (1);
Cl (9);
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4bah (Na: 2) - Thrombin in Complex with Inhibitor
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4bak (Na: 2) - Thrombin in Complex with Inhibitor
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4bam (Na: 2) - Thrombin in Complex with Inhibitor
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4ban (Na: 2) - Thrombin in Complex with Inhibitor
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4bao (Na: 2) - Thrombin in Complex with Inhibitor
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4bap (Na: 2) - Hen Egg-White Lysozyme Structure in Complex with the Europium Tris-Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.
Other atoms:
Eu (1);
Cl (8);
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4baq (Na: 2) - Thrombin in Complex with Inhibitor
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4bax (Na: 8) - Crystal Structure of Glutamine Synthetase From Streptomyces Coelicolor
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4bdl (Na: 2) - Crystal Structure of the GLUK2 K531A Lbd Dimer in Complex with Glutamate
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4bdn (Na: 4) - Crystal Structure of the GLUK2 K531A-T779G Lbd Dimer in Complex with Glutamate
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4bdo (Na: 4) - Crystal Structure of the GLUK2 K531A-T779G Lbd Dimer in Complex with Kainate
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4bdq (Na: 2) - Crystal Structure of the GLUK2 R775A Lbd Dimer in Complex with Glutamate
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4bdr (Na: 2) - Crystal Structure of the GLUK2 R775A Lbd Dimer in Complex with Kainate
Other atoms:
Cl (1);
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4be3 (Na: 1) - Crystal Structure of the Exolytic PL7 Alginate Lyase ALYA5 From Zobellia Galactanivorans
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4be5 (Na: 1) - V. Cholera Biofilm Scaffolding Protein Rbma
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4bek (Na: 2) - Crystal Structure of Bace-1 in Complex with Chemical Ligand
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4bem (Na: 10) - Crystal Structure of the F-Type Atp Synthase C-Ring From Acetobacterium Woodii.
Other atoms:
Mn (1);
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4bf1 (Na: 1) - Three Dimensional Structure of Human Carbonic Anhydrase II in Complex with 5-(1-Naphthalen-1-Yl-1,2,3-Triazol-4-Yl) Thiophene-2-Sulfonamide
Other atoms:
Zn (1);
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4bfd (Na: 2) - Crystal Structure of Bace-1 in Complex with Chemical Ligand
Other atoms:
F (1);
Cl (1);
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4bgq (Na: 1) - Crystal Structure of the Human CDKL5 Kinase Domain
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4bin (Na: 1) - Crystal Structure of the E. Coli N-Acetylmuramoyl-L-Alanine Amidase Amic
Other atoms:
Zn (1);
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4bk7 (Na: 1) - Crystal Structure of A Variant of the Major Birch Pollen Allergen Bet V 1
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4bkr (Na: 1) - Enoyl-Acp Reductase From Yersinia Pestis (Wildtype, Removed Histag)with Cofactor Nadh
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