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Sodium in PDB 4bad: Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution.

Enzymatic activity of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution.

All present enzymatic activity of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution.:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution., PDB code: 4bad was solved by R.Talon, R.Kahn, A.Gautier, L.Nauton, E.Girard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.77 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.403, 77.403, 38.473, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.2

Other elements in 4bad:

The structure of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution. also contains other interesting chemical elements:

Europium (Eu) 2 atoms
Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution. (pdb code 4bad). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution., PDB code: 4bad:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4bad

Go back to Sodium Binding Sites List in 4bad
Sodium binding site 1 out of 2 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1139

b:27.7
occ:1.00
 ND2 A:ASN74 3.1 13.2 1.0
CL A:CL1135 3.1 29.9 1.0
C A:ILE78 3.4 11.2 1.0
N A:PRO79 3.6 11.2 1.0
N A:ILE78 3.6 11.7 1.0
CA A:ILE78 3.6 13.6 1.0
O A:ILE78 3.8 11.1 1.0
C A:ASN77 3.9 13.2 1.0
CD A:PRO79 3.9 14.1 1.0
O A:ASN77 4.1 15.1 1.0
OD1 A:ASN77 4.2 20.9 0.5
CG A:ASN74 4.3 11.8 1.0
CA A:PRO79 4.4 10.9 1.0
CB A:ASN65 4.4 11.9 1.0
OD1 A:ASN74 4.6 11.7 1.0
CA A:ASN77 4.6 12.4 0.5
CA A:ASN77 4.7 12.8 0.5
O A:HOH2104 4.7 26.0 1.0
CB A:PRO79 5.0 12.1 1.0
CG A:ASN77 5.0 18.1 0.5
CG A:PRO79 5.0 17.3 1.0

Sodium binding site 2 out of 2 in 4bad

Go back to Sodium Binding Sites List in 4bad
Sodium binding site 2 out of 2 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxymethyltriazoledipicolinate Complex at 1.35 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1140

b:35.1
occ:1.00
 CL A:CL1134 3.3 14.5 1.0
CD1 A:ILE124 3.6 23.0 1.0
OD1 A:ASP18 3.9 15.2 0.5
CB A:SER24 4.1 11.9 1.0
N A:LEU25 4.4 9.6 1.0
CB A:LEU25 4.6 10.2 1.0
OD2 A:ASP18 4.6 18.5 0.5
CG A:ASP18 4.7 15.6 0.5
OG A:SER24 4.8 14.2 1.0
O A:HOH2043 4.8 33.6 1.0
CG1 A:ILE124 4.9 16.6 1.0
O A:HOH2021 4.9 34.4 1.0
CA A:SER24 4.9 10.2 1.0

Reference:

R.Talon, L.Nauton, J.Canet, R.Kahn, E.Girard, A.Gautier. Clicked Europium Dipicolinate Complexes For Protein X-Ray Structure Determination. Chem.Commun.(Camb.) V. 48 11886 2012.
ISSN: ISSN 1359-7345
PubMed: 23123834
DOI: 10.1039/C2CC36982F
Page generated: Mon Oct 7 14:28:13 2024

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