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Sodium in PDB 4b1l: Carbohydrate Binding Module CBM66 From Bacillus Subtilis

Enzymatic activity of Carbohydrate Binding Module CBM66 From Bacillus Subtilis

All present enzymatic activity of Carbohydrate Binding Module CBM66 From Bacillus Subtilis:
3.2.1.80;

Protein crystallography data

The structure of Carbohydrate Binding Module CBM66 From Bacillus Subtilis, PDB code: 4b1l was solved by F.Cuskin, J.E.Flint, C.Morland, A.Basle, B.Henrissat, P.M.Countinho, A.Strazzulli, A.Solzehinkin, G.J.Davies, H.J.Gilbert, T.M.Gloster, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.13 / 1.65
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 38.616, 38.616, 162.391, 90.00, 90.00, 120.00
R / Rfree (%) 17.61 / 25.591

Sodium Binding Sites:

The binding sites of Sodium atom in the Carbohydrate Binding Module CBM66 From Bacillus Subtilis (pdb code 4b1l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Carbohydrate Binding Module CBM66 From Bacillus Subtilis, PDB code: 4b1l:

Sodium binding site 1 out of 1 in 4b1l

Go back to Sodium Binding Sites List in 4b1l
Sodium binding site 1 out of 1 in the Carbohydrate Binding Module CBM66 From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Carbohydrate Binding Module CBM66 From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1679

b:8.5
occ:1.00
O A:HOH2028 2.2 25.6 1.0
O A:ALA595 2.3 17.7 1.0
OD1 A:ASP598 2.3 17.3 1.0
O A:ILE620 2.4 13.5 1.0
C A:ALA595 3.4 13.2 1.0
CG A:ASP598 3.4 16.6 1.0
C A:ILE620 3.5 12.5 1.0
OD2 A:ASP598 3.7 22.3 1.0
CA A:ALA595 3.9 13.3 1.0
N A:ILE620 4.1 13.2 1.0
CA A:ILE620 4.3 13.0 1.0
CB A:ALA595 4.4 15.3 1.0
N A:ASP621 4.4 13.4 1.0
N A:LYS596 4.5 15.6 1.0
O A:HOH2036 4.5 22.9 1.0
CA A:ASP621 4.5 15.3 1.0
OD1 A:ASP621 4.6 21.5 1.0
CB A:ASP598 4.7 13.7 1.0
N A:ASP598 4.8 12.3 1.0
CB A:ILE620 4.8 12.8 1.0
CA A:ASP598 4.8 11.4 1.0
CA A:LYS596 4.8 15.1 1.0
C A:LYS596 4.9 14.9 1.0
O A:LYS596 4.9 19.3 1.0

Reference:

F.Cuskin, J.E.Flint, T.M.Gloster, C.Morland, A.Basle, B.Henrissat, P.M.Coutinho, A.Strazzulli, A.S.Solovyova, G.J.Davies, H.J.Gilbert. How Nature Can Exploit Nonspecific Catalytic and Carbohydrate Binding Modules to Create Enzymatic Specificity Proc.Natl.Acad.Sci.Usa V. 109 20889 2012.
ISSN: ISSN 0027-8424
PubMed: 23213210
DOI: 10.1073/PNAS.1212034109
Page generated: Tue Dec 15 06:33:29 2020

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