Sodium in PDB 4bk7: Crystal Structure of A Variant of the Major Birch Pollen Allergen Bet V 1

The structure of Crystal Structure of A Variant of the Major Birch Pollen Allergen Bet V 1, PDB code: 4bk7 was solved by S.Kofler, H.Brandstetter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.04 / 1.14
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	32.732, 55.811, 38.099, 90.00, 93.25, 90.00
R / Rfree (%)	13.446 / 17.545

The binding sites of Sodium atom in the Crystal Structure of A Variant of the Major Birch Pollen Allergen Bet V 1 (pdb code 4bk7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Variant of the Major Birch Pollen Allergen Bet V 1, PDB code: 4bk7:

Sodium binding site 1 out of 1 in the Crystal Structure of A Variant of the Major Birch Pollen Allergen Bet V 1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Variant of the Major Birch Pollen Allergen Bet V 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1168 b:30.3 occ:1.00 OD1 A:ASP109 2.1 17.7 1.0 OD2 A:ASP109 2.3 30.1 1.0 O A:HOH2014 2.3 20.9 1.0 CG A:ASP109 2.5 20.5 1.0 OG1 A:THR107 2.6 18.3 1.0 CB A:THR107 3.6 13.3 1.0 O A:HOH2004 3.7 26.8 1.0 CA A:GLY111 3.7 9.4 1.0 N A:GLY111 3.8 10.5 1.0 O A:HOH2122 3.9 25.4 1.0 CB A:ASP109 4.0 16.6 1.0 C A:GLY111 4.1 7.7 1.0 N A:SER112 4.2 7.3 1.0 CG2 A:THR107 4.2 16.9 1.0 O A:SER11 4.4 9.4 0.7 O A:SER11 4.4 10.2 0.3 O A:GLY111 4.7 8.3 1.0 CA A:ASP109 4.8 13.2 1.0 N A:ASP109 4.8 12.6 1.0 C A:ASP109 4.9 13.1 1.0 O A:SER112 4.9 7.4 1.0 CA A:THR107 4.9 11.5 1.0 N A:GLY110 5.0 10.8 1.0

S.G.Kofler, C.Ackaert, M.Samonig, C.Asam, P.Briza, J.Horeis-Hoeck, C.Cabrele, F.Ferreira, A.Duschl, C.Huber, H.Brandstetter. Stabilization of the Dimeric Birch Pollen Allergen Bet V 1 Impacts Its Immunological Properties J.Biol.Chem. V. 289 540 2014.
ISSN: ISSN 0021-9258
PubMed: 24253036
DOI: 10.1074/JBC.M113.518795