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Sodium in PDB 4ba1: Archaeal Exosome (RRP4-RRP41(D182A)-RRP42) Bound to Inorganic Phosphate

Protein crystallography data

The structure of Archaeal Exosome (RRP4-RRP41(D182A)-RRP42) Bound to Inorganic Phosphate, PDB code: 4ba1 was solved by E.Lorentzen, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.75 / 1.80
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 135.070, 135.070, 135.070, 90.00, 90.00, 90.00
R / Rfree (%) 18.463 / 22.171

Sodium Binding Sites:

The binding sites of Sodium atom in the Archaeal Exosome (RRP4-RRP41(D182A)-RRP42) Bound to Inorganic Phosphate (pdb code 4ba1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Archaeal Exosome (RRP4-RRP41(D182A)-RRP42) Bound to Inorganic Phosphate, PDB code: 4ba1:

Sodium binding site 1 out of 1 in 4ba1

Go back to Sodium Binding Sites List in 4ba1
Sodium binding site 1 out of 1 in the Archaeal Exosome (RRP4-RRP41(D182A)-RRP42) Bound to Inorganic Phosphate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Archaeal Exosome (RRP4-RRP41(D182A)-RRP42) Bound to Inorganic Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na401

b:33.3
occ:1.00
O B:ILE101 2.6 21.8 1.0
OE1 A:GLU105 2.8 33.0 1.0
NE2 A:HIS0 2.8 75.5 1.0
CB A:GLU105 3.5 29.9 1.0
CG2 B:ILE101 3.5 26.8 1.0
C B:ILE101 3.5 23.4 1.0
CB A:SER2 3.6 53.6 1.0
CE1 A:HIS0 3.7 77.6 1.0
O A:HOH2003 3.7 45.8 1.0
CB B:SER104 3.7 22.7 1.0
CA B:ILE101 3.7 25.1 1.0
CD2 A:HIS0 3.8 77.7 1.0
CD A:GLU105 3.8 33.0 1.0
N B:LYS105 3.9 21.9 1.0
CA A:SER2 4.1 56.5 1.0
OG A:SER2 4.1 50.9 1.0
CB B:ILE101 4.2 26.4 1.0
N A:SER2 4.2 59.6 1.0
CB B:LYS105 4.3 24.2 1.0
CG A:GLU105 4.3 31.0 1.0
C B:SER104 4.4 21.9 1.0
CA B:LYS105 4.5 23.1 1.0
CA B:SER104 4.6 21.5 1.0
OG B:SER104 4.6 23.0 1.0
C A:MET1 4.6 64.3 1.0
CA A:GLU105 4.7 28.7 1.0
N B:GLU102 4.7 22.6 1.0
CG1 B:ILE101 4.8 27.8 1.0
ND1 A:HIS0 4.9 81.6 1.0
O A:MET1 4.9 64.6 1.0
OE2 A:GLU105 4.9 34.1 1.0
O B:GLU100 4.9 23.5 1.0
N B:SER104 4.9 20.1 1.0
CG A:HIS0 5.0 81.0 1.0

Reference:

E.Lorentzen, E.Conti. Crystal Structure of A 9-Subunit Archaeal Exosome in Pre- Catalytic States of the Phosphorolytic Reaction. Archaea V.2012 21869 2012.
ISSN: ISSN 1472-3646
PubMed: 23319881
DOI: 10.1155/2012/721869
Page generated: Tue Dec 15 06:33:39 2020

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