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Sodium in PDB 4be5: V. Cholera Biofilm Scaffolding Protein Rbma

Protein crystallography data

The structure of V. Cholera Biofilm Scaffolding Protein Rbma, PDB code: 4be5 was solved by M.Maestre-Reyna, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.72 / 2.46
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 118.888, 118.888, 104.781, 90.00, 90.00, 90.00
R / Rfree (%) 18.28 / 23.434

Sodium Binding Sites:

The binding sites of Sodium atom in the V. Cholera Biofilm Scaffolding Protein Rbma (pdb code 4be5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the V. Cholera Biofilm Scaffolding Protein Rbma, PDB code: 4be5:

Sodium binding site 1 out of 1 in 4be5

Go back to Sodium Binding Sites List in 4be5
Sodium binding site 1 out of 1 in the V. Cholera Biofilm Scaffolding Protein Rbma


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of V. Cholera Biofilm Scaffolding Protein Rbma within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1274

b:42.8
occ:1.00
O A:HOH2120 2.3 39.0 1.0
O A:HOH2103 2.3 31.8 1.0
ND2 A:ASN199 3.1 34.8 1.0
CG A:ASN199 4.0 35.7 1.0
OD1 A:ASN199 4.0 40.0 1.0
NZ A:LYS221 4.2 31.6 1.0
CG2 A:ILE256 4.8 40.8 1.0
O A:HOH2052 4.8 44.2 1.0
CE A:LYS221 4.9 30.6 1.0

Reference:

M.Maestre-Reyna, W.Wu, A.H.Wang. Structural Insights Into Rbma, A Biofilm Scaffolding Protein of V. Cholerae. Plos One V. 8 82458 2013.
ISSN: ISSN 1932-6203
PubMed: 24340031
DOI: 10.1371/JOURNAL.PONE.0082458
Page generated: Tue Dec 15 06:33:57 2020

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