Sodium in PDB, part 82 (files: 3241-3280),
PDB 3t0a-3tjl
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 3241-3280 (PDB 3t0a-3tjl).
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3t0a (Na: 17) - E. Coli (Lacz) Beta-Galactosidase (S796T)
Other atoms:
Mg (12);
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3t0b (Na: 14) - E. Coli (Lacz) Beta-Galactosidase (S796T) Iptg Complex
Other atoms:
Mg (8);
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3t0d (Na: 16) - E.Coli (Lacz) Beta-Galactosidase (S796T) in Complex with Galactonolactone
Other atoms:
Mg (9);
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3t2h (Na: 1) - Tetragonal Thermolysin in the Presence of Tmao
Other atoms:
Zn (2);
Ca (4);
Cl (8);
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3t2i (Na: 1) - Tetragonal Thermolysin in the Presence of Sarcosine
Other atoms:
Zn (2);
Ca (4);
Cl (3);
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3t2j (Na: 1) - Tetragonal Thermolysin in the Presence of Betaine
Other atoms:
Zn (3);
Ca (4);
Cl (2);
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3t2o (Na: 16) - E. Coli (Lacz) Beta-Galactosidase (S796D)
Other atoms:
Mg (16);
-
3t2p (Na: 10) - E. Coli (Lacz) Beta-Galactosidase (S796D) in Complex with Iptg
Other atoms:
Mg (8);
-
3t2q (Na: 11) - E. Coli (Lacz) Beta-Galactosidase (S796D) in Complex with Galactonolactone
Other atoms:
Mg (8);
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3t34 (Na: 2) - Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State
Other atoms:
F (8);
Mg (2);
Al (2);
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3t3f (Na: 1) - Ternary Structure of the Large Fragment of Taq Dna Polymerase Bound to An Abasic Site and Dnitp
Other atoms:
Mg (4);
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3t46 (Na: 4) - Crystal Structure of Staphylococcal Complement Inhibitor D (Scin-D) at 1.5 Angstrom
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3t4u (Na: 6) - L29I Mutation in An Aryl Esterase From Pseudomonas Fluorescens Leads to Unique Peptide Flip and Increased Activity
Other atoms:
Cl (6);
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3t5f (Na: 2) - Human Thrombin in Complex with MI340
Other atoms:
Cl (1);
-
3t6u (Na: 6) - Crystal Structure of Lysozyme in 40% Sucrose
Other atoms:
Cl (7);
-
3t7y (Na: 3) - Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis
Other atoms:
Cl (3);
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3t7z (Na: 1) - Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain
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3t8j (Na: 1) - Structural Analysis of Thermostable S. Solfataricus Pyrimidine- Specific Nucleoside Hydrolase
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3t90 (Na: 1) - Crystal Structure of Glucosamine-6-Phosphate N-Acetyltransferase From Arabidopsis Thaliana
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3t9g (Na: 4) - The Crystal Structure of Family 3 Pectate Lyase From Caldicellulosiruptor Bescii
Other atoms:
Cl (1);
Ca (2);
-
3tau (Na: 1) - Crystal Structure of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E
-
3tav (Na: 2) - Crystal Structure of A Methionine Aminopeptidase From Mycobacterium Abscessus
Other atoms:
Mg (4);
Cl (3);
-
3tay (Na: 2) - Crystal Structure of Porcine Rotavirus Crw-8 VP8* in Complex with N- Glycolylneuraminic Acid
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3tbh (Na: 1) - Crystal Structure of O-Acetyl Serine Sulfhydrylase in Complex with Octapeptide Derived From Serine Acetyl Transferase of Leishmania Donovani
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3tde (Na: 1) - Crystal Structure of S-Adenosylmethionine Synthetase RV1392 From Mycobacterium Tuberculosis
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3tdq (Na: 1) - Crystal Structure of A Fimbrial Biogenesis Protein PILY2 (PILY2_PA4555) From Pseudomonas Aeruginosa PAO1 at 2.10 A Resolution
Other atoms:
Cl (1);
-
3tf8 (Na: 1) - Crystal Structure of An H-Nox Protein From Nostoc Sp. Pcc 7120
Other atoms:
Fe (2);
-
3tf9 (Na: 2) - Crystal Structure of An H-Nox Protein From Nostoc Sp. Pcc 7120 Under 1 Atm of Xenon
Other atoms:
Xe (2);
Fe (2);
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3tfh (Na: 2) - Dmsp-Dependent Demethylase From P. Ubique - Apo
-
3tfi (Na: 2) - Dmsp-Dependent Demethylase From P. Ubique - with Substrate Dmsp
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3tfj (Na: 2) - Dmsp-Dependent Demethylase From P. Ubique - with Cofactor Thf
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3tfr (Na: 2) - Ternary Complex Structure of Dna Polymerase Beta with A Gapped Dna Substrate and A, B Damp(CF2)Pp in the Active Site
Other atoms:
F (2);
Mg (2);
Cl (4);
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3tfs (Na: 2) - Ternary Complex Structure of Dna Polymerase Beta with A Gapped Dna Substrate and A, B Damp(Cfh)Pp in the Active Site: Stereoselective Binding of (S) Isomer
Other atoms:
F (1);
Mg (2);
Cl (4);
-
3tgo (Na: 1) - Crystal Structure of the E. Coli Bamcd Complex
Other atoms:
K (1);
Cl (1);
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3th2 (Na: 1) - MG2+ Is Required For Optimal Folding of the Gamma-Carboxyglutamic Acid (Gla) Domains of Vitamin K-Dependent Clotting Factors at Physiological CA2+
Other atoms:
Mg (3);
Cl (2);
Ca (6);
-
3th4 (Na: 1) - MG2+ Is Required For Optimal Folding of the Gamma-Carboxyglutamic Acid (Gla) Domains of Vitamin K-Dependent Clotting Factors at Physiological CA2+
Other atoms:
Mg (2);
Cl (3);
Ca (7);
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3thx (Na: 1) - Human Mutsbeta Complexed with An Idl of 3 Bases (LOOP3) and Adp
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3tif (Na: 2) - Dimeric Structure of A Post-Hydrolysis State of the Atp-Binding Cassette MJ0796 Bound to Adp and Pi
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3tij (Na: 1) - Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae
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3tjl (Na: 4) - Crystal Structure of A Novel Oye From the Xylose-Fermenting Fungus P. Stipitis
Page generated: Sun Dec 15 11:35:53 2024
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