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Sodium in PDB, part 82 (files: 3241-3280), PDB 3t0a-3tjl

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 3241-3280 (PDB 3t0a-3tjl).
  1. 3t0a (Na: 17) - E. Coli (Lacz) Beta-Galactosidase (S796T)
    Other atoms: Mg (12);
  2. 3t0b (Na: 14) - E. Coli (Lacz) Beta-Galactosidase (S796T) Iptg Complex
    Other atoms: Mg (8);
  3. 3t0d (Na: 16) - E.Coli (Lacz) Beta-Galactosidase (S796T) in Complex with Galactonolactone
    Other atoms: Mg (9);
  4. 3t2h (Na: 1) - Tetragonal Thermolysin in the Presence of Tmao
    Other atoms: Zn (2); Ca (4); Cl (8);
  5. 3t2i (Na: 1) - Tetragonal Thermolysin in the Presence of Sarcosine
    Other atoms: Zn (2); Ca (4); Cl (3);
  6. 3t2j (Na: 1) - Tetragonal Thermolysin in the Presence of Betaine
    Other atoms: Zn (3); Ca (4); Cl (2);
  7. 3t2o (Na: 16) - E. Coli (Lacz) Beta-Galactosidase (S796D)
    Other atoms: Mg (16);
  8. 3t2p (Na: 10) - E. Coli (Lacz) Beta-Galactosidase (S796D) in Complex with Iptg
    Other atoms: Mg (8);
  9. 3t2q (Na: 11) - E. Coli (Lacz) Beta-Galactosidase (S796D) in Complex with Galactonolactone
    Other atoms: Mg (8);
  10. 3t34 (Na: 2) - Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State
    Other atoms: F (8); Mg (2); Al (2);
  11. 3t3f (Na: 1) - Ternary Structure of the Large Fragment of Taq Dna Polymerase Bound to An Abasic Site and Dnitp
    Other atoms: Mg (4);
  12. 3t46 (Na: 4) - Crystal Structure of Staphylococcal Complement Inhibitor D (Scin-D) at 1.5 Angstrom
  13. 3t4u (Na: 6) - L29I Mutation in An Aryl Esterase From Pseudomonas Fluorescens Leads to Unique Peptide Flip and Increased Activity
    Other atoms: Cl (6);
  14. 3t5f (Na: 2) - Human Thrombin in Complex with MI340
    Other atoms: Cl (1);
  15. 3t6u (Na: 6) - Crystal Structure of Lysozyme in 40% Sucrose
    Other atoms: Cl (7);
  16. 3t7y (Na: 3) - Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis
    Other atoms: Cl (3);
  17. 3t7z (Na: 1) - Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain
  18. 3t8j (Na: 1) - Structural Analysis of Thermostable S. Solfataricus Pyrimidine- Specific Nucleoside Hydrolase
  19. 3t90 (Na: 1) - Crystal Structure of Glucosamine-6-Phosphate N-Acetyltransferase From Arabidopsis Thaliana
  20. 3t9g (Na: 4) - The Crystal Structure of Family 3 Pectate Lyase From Caldicellulosiruptor Bescii
    Other atoms: Cl (1); Ca (2);
  21. 3tau (Na: 1) - Crystal Structure of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E
  22. 3tav (Na: 2) - Crystal Structure of A Methionine Aminopeptidase From Mycobacterium Abscessus
    Other atoms: Mg (4); Cl (3);
  23. 3tay (Na: 2) - Crystal Structure of Porcine Rotavirus Crw-8 VP8* in Complex with N- Glycolylneuraminic Acid
  24. 3tbh (Na: 1) - Crystal Structure of O-Acetyl Serine Sulfhydrylase in Complex with Octapeptide Derived From Serine Acetyl Transferase of Leishmania Donovani
  25. 3tde (Na: 1) - Crystal Structure of S-Adenosylmethionine Synthetase RV1392 From Mycobacterium Tuberculosis
  26. 3tdq (Na: 1) - Crystal Structure of A Fimbrial Biogenesis Protein PILY2 (PILY2_PA4555) From Pseudomonas Aeruginosa PAO1 at 2.10 A Resolution
    Other atoms: Cl (1);
  27. 3tf8 (Na: 1) - Crystal Structure of An H-Nox Protein From Nostoc Sp. Pcc 7120
    Other atoms: Fe (2);
  28. 3tf9 (Na: 2) - Crystal Structure of An H-Nox Protein From Nostoc Sp. Pcc 7120 Under 1 Atm of Xenon
    Other atoms: Xe (2); Fe (2);
  29. 3tfh (Na: 2) - Dmsp-Dependent Demethylase From P. Ubique - Apo
  30. 3tfi (Na: 2) - Dmsp-Dependent Demethylase From P. Ubique - with Substrate Dmsp
  31. 3tfj (Na: 2) - Dmsp-Dependent Demethylase From P. Ubique - with Cofactor Thf
  32. 3tfr (Na: 2) - Ternary Complex Structure of Dna Polymerase Beta with A Gapped Dna Substrate and A, B Damp(CF2)Pp in the Active Site
    Other atoms: F (2); Mg (2); Cl (4);
  33. 3tfs (Na: 2) - Ternary Complex Structure of Dna Polymerase Beta with A Gapped Dna Substrate and A, B Damp(Cfh)Pp in the Active Site: Stereoselective Binding of (S) Isomer
    Other atoms: F (1); Mg (2); Cl (4);
  34. 3tgo (Na: 1) - Crystal Structure of the E. Coli Bamcd Complex
    Other atoms: K (1); Cl (1);
  35. 3th2 (Na: 1) - MG2+ Is Required For Optimal Folding of the Gamma-Carboxyglutamic Acid (Gla) Domains of Vitamin K-Dependent Clotting Factors at Physiological CA2+
    Other atoms: Mg (3); Cl (2); Ca (6);
  36. 3th4 (Na: 1) - MG2+ Is Required For Optimal Folding of the Gamma-Carboxyglutamic Acid (Gla) Domains of Vitamin K-Dependent Clotting Factors at Physiological CA2+
    Other atoms: Mg (2); Cl (3); Ca (7);
  37. 3thx (Na: 1) - Human Mutsbeta Complexed with An Idl of 3 Bases (LOOP3) and Adp
  38. 3tif (Na: 2) - Dimeric Structure of A Post-Hydrolysis State of the Atp-Binding Cassette MJ0796 Bound to Adp and Pi
  39. 3tij (Na: 1) - Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae
  40. 3tjl (Na: 4) - Crystal Structure of A Novel Oye From the Xylose-Fermenting Fungus P. Stipitis
Page generated: Fri Dec 24 09:43:37 2021

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