Sodium in PDB 3t7z: Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain

The structure of Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain, PDB code: 3t7z was solved by S.Biswas, S.Maxwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.96 / 1.70
Space group	F 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	45.695, 86.511, 129.387, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 23.1

The binding sites of Sodium atom in the Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain (pdb code 3t7z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain, PDB code: 3t7z:

Sodium binding site 1 out of 1 in the Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na121 b:34.7 occ:1.00 OG A:SER21 2.3 17.8 1.0 OD2 A:ASP25 2.6 34.3 1.0 OD1 A:ASP25 2.9 34.6 1.0 CG A:ASP25 3.0 32.5 1.0 CB A:SER21 3.8 34.2 1.0 N A:SER21 4.4 24.0 1.0 CB A:ASP25 4.4 26.6 1.0 CA A:SER21 4.8 25.5 1.0 O A:GLU19 4.8 32.7 1.0

K.T.Gagnon, S.Biswas, X.Zhang, B.A.Brown, P.Wollenzien, C.Mattos, E.S.Maxwell. Structurally Conserved NOP56/58 N-Terminal Domain Facilitates Archaeal Box C/D Ribonucleoprotein-Guided Methyltransferase Activity. J.Biol.Chem. V. 287 19418 2012.
ISSN: ISSN 0021-9258
PubMed: 22496443
DOI: 10.1074/JBC.M111.323253