Sodium in the structure of Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain (pdb 3t7z)

The binding sites of Sodium atom in the structure of Structure of Methanocaldococcus Jannaschii Nop N-Terminal Domain (pdb code 3t7z). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3t7z structure was solved by S.BISWAS, S.MAXWELL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 36.0-1.7 Space group F222 a (A) 45.695 b (A) 86.511 c (A) 129.387 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 20.2 Rfree (%) 23.1 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3t7z Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3t7z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu19, A: Ser21, A: Asp25, conact list: Atom Atom Distance (A) Na O A:Glu19 4.80 Na N A:Ser21 4.41 Na CB A:Ser21 3.80 Na OG A:Ser21 2.33 Na CA A:Ser21 4.77 Na CB A:Asp25 4.44 Na OD2 A:Asp25 2.59 Na OD1 A:Asp25 2.94 Na CG A:Asp25 3.03 interactive model: