Sodium in PDB 3tij: Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae

The structure of Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae, PDB code: 3tij was solved by Z.L.Johnson, C.-G.Cheong, S.-Y.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.75 / 2.44
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	119.717, 119.717, 83.136, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 22.8

The binding sites of Sodium atom in the Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae (pdb code 3tij). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae, PDB code: 3tij:

Sodium binding site 1 out of 1 in the Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na421 b:49.4 occ:1.00 O A:HOH467 2.3 42.9 1.0 OG A:SER183 2.4 47.1 1.0 O A:ILE184 2.4 44.3 1.0 OD1 A:ASN149 2.5 46.7 1.0 O A:VAL152 2.5 46.4 1.0 O A:ASN149 2.5 47.3 1.0 CB A:SER183 3.2 44.5 1.0 CG A:ASN149 3.3 48.1 1.0 C A:ASN149 3.3 44.1 1.0 CB A:ASN149 3.4 45.3 1.0 CA A:ASN149 3.4 45.2 1.0 C A:ILE184 3.6 42.3 1.0 C A:VAL152 3.6 42.9 1.0 N A:ILE184 3.8 45.2 1.0 CA A:GLY153 3.9 41.3 1.0 C A:SER183 3.9 43.7 1.0 C A:GLY153 4.0 43.9 1.0 CA A:SER183 4.1 44.0 1.0 N A:GLN154 4.1 39.6 1.0 N A:GLY153 4.2 45.7 1.0 CA A:ILE184 4.2 43.5 1.0 O A:HOH433 4.2 50.0 1.0 O A:GLY179 4.4 46.8 1.0 O A:GLY180 4.4 46.8 1.0 O A:SER183 4.5 41.3 1.0 O A:GLY153 4.5 46.5 1.0 ND2 A:ASN149 4.5 43.7 1.0 N A:ILE150 4.6 47.9 1.0 N A:ALA185 4.7 43.5 1.0 CA A:GLY180 4.7 41.8 1.0 CA A:GLN154 4.8 43.0 1.0 N A:VAL152 4.8 44.6 1.0 CA A:VAL152 4.8 41.2 1.0 N A:SER183 4.8 47.0 1.0 N A:ASN149 4.8 50.5 1.0 CA A:ALA185 4.9 45.3 1.0 C A:GLY180 5.0 42.1 1.0

Z.L.Johnson, C.G.Cheong, S.Y.Lee. Crystal Structure of A Concentrative Nucleoside Transporter From Vibrio Cholerae at 2.4A Nature V. 483 489 2012.
ISSN: ISSN 0028-0836
PubMed: 22407322
DOI: 10.1038/NATURE10882