Sodium in PDB 3t7y: Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis

The structure of Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis, PDB code: 3t7y was solved by A.U.Singer, Z.Wawrzak, T.Skarina, P.Saikali, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.58 / 2.10
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	68.365, 68.365, 37.335, 90.00, 90.00, 120.00
R / Rfree (%)	18.8 / 22.5

The structure of Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Sodium atom in the Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis (pdb code 3t7y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis, PDB code: 3t7y:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:46.2 occ:1.00 N B:VAL309 3.1 33.3 1.0 O B:HOH65 3.1 42.3 1.0 OE2 A:GLU299 3.2 63.5 1.0 CD A:GLU299 3.2 63.6 1.0 O B:ARG307 3.6 29.6 0.5 OE1 A:GLU299 3.6 84.4 1.0 CA B:ASN308 3.7 30.1 1.0 CG A:GLU299 3.7 52.5 1.0 CG2 B:VAL309 3.7 34.5 1.0 NE B:ARG307 3.7 32.6 0.5 NH1 B:ARG307 3.9 35.8 0.5 C B:ASN308 3.9 32.6 1.0 CB B:VAL309 3.9 32.1 1.0 O B:ARG307 4.0 32.6 0.5 C B:ARG307 4.1 33.4 0.5 CA B:VAL309 4.1 33.1 1.0 N B:ASN308 4.2 24.5 1.0 CD B:PRO310 4.2 34.3 1.0 C B:ARG307 4.2 34.2 0.5 CZ B:ARG307 4.3 34.9 0.5 CG B:ARG307 4.4 38.7 0.5 CD B:ARG307 4.5 40.6 0.5 OD1 B:ASN308 4.6 27.9 1.0 CG B:ARG307 4.7 39.2 0.5 CB A:GLU299 4.8 47.5 1.0 CB B:ASN308 4.8 28.4 1.0 CG B:ASN308 5.0 28.4 1.0 CB B:ARG307 5.0 35.7 0.5 CD1 A:ILE305 5.0 34.2 1.0

Sodium binding site 2 out of 3 in the Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na2 b:48.6 occ:1.00 N A:VAL309 3.1 34.8 1.0 OE2 B:GLU299 3.2 62.1 1.0 CD B:GLU299 3.2 63.2 1.0 O A:HOH63 3.3 43.1 1.0 NH1 A:ARG307 3.6 32.0 0.5 OE1 B:GLU299 3.6 85.0 1.0 CA A:ASN308 3.7 30.6 1.0 O A:ARG307 3.7 29.8 0.5 CG2 A:VAL309 3.7 33.4 1.0 CG B:GLU299 3.7 52.6 1.0 C A:ASN308 3.9 31.9 1.0 CB A:VAL309 3.9 34.0 1.0 CD A:ARG307 4.0 37.7 0.5 CA A:VAL309 4.1 33.1 1.0 CD A:PRO310 4.1 32.7 1.0 O A:ARG307 4.1 30.6 0.5 C A:ARG307 4.1 33.0 0.5 N A:ASN308 4.2 26.9 1.0 C A:ARG307 4.3 34.0 0.5 CG A:ARG307 4.4 38.4 0.5 CZ A:ARG307 4.4 32.0 0.5 NE A:ARG307 4.6 30.6 0.5 OD1 A:ASN308 4.6 26.5 1.0 CB B:GLU299 4.8 47.6 1.0 CB A:ASN308 4.9 26.2 1.0 CG A:ARG307 4.9 39.2 0.5 CG A:ASN308 5.0 29.0 1.0 CB A:ARG307 5.0 35.9 0.5

Sodium binding site 3 out of 3 in the Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na3 b:52.0 occ:1.00 O1 B:FMT1 3.0 33.7 1.0 OE1 B:GLU275 3.1 27.0 1.0 CD B:GLU275 3.6 54.0 1.0 C B:FMT1 3.8 0.0 1.0 CE B:MET273 3.8 24.6 1.0 CG B:GLU275 3.8 82.4 1.0 CB B:GLU275 3.9 39.4 1.0 CG B:MET273 4.2 27.5 1.0 OE2 B:GLU275 4.4 77.1 1.0 SD B:MET273 4.8 26.4 1.0 O2 B:FMT1 4.9 35.6 1.0

A.U.Singer, Z.Wawrzak, T.Skarina, P.Saikali, W.F.Anderson, A.Savchenko. Structure of An Autocleavage-Inactive Mutant of the Cytoplasmic Domain of CT091, the Yscu Homologue of Chlamydia Trachomatis To Be Published.