Sodium in PDB, part 281 (files: 11201-11240),
PDB 8ihy-8jzi
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11201-11240 (PDB 8ihy-8jzi).
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8ihy (Na: 1) - X-Ray Crystal Structure of Q387E Mutant of Endo-1,4-Beta Glucanase From Eisenia Fetida
Other atoms:
Ca (1);
Mg (1);
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8ijl (Na: 2) - Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp
Other atoms:
F (4);
Al (1);
Mg (1);
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8ijm (Na: 2) - Cyo-Em Structure of K794A Non-Gastric Proton Pump in Na+ Bound E1AMPPCP State
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8ijn (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Nitric Oxide-Bound Fully Reduced State at 100 K
Other atoms:
Zn (2);
Mg (2);
Fe (4);
Cu (6);
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8ilu (Na: 1) - Crystal Structure of Mouse Galectin-3 in Complex with Small Molecule Inhibitor
Other atoms:
F (6);
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8ing (Na: 2) - Structure of the Ternary Complex of Lactoperoxidase with Substrate Nitric Oxide (No) and Product Nitrite Ion (NO2) at 1.98 A Resolution
Other atoms:
Ca (1);
I (13);
Fe (1);
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8iq8 (Na: 4) - Crystal Structure of 3,4-Dihydroxyphenylacetate 2,3-Dioxygenase (Dhpao) From Acinetobacter Baumannii
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8itz (Na: 1) - Crystal Structure of Human Galectin-3 in Complex with Small Molecule Inhibitor
Other atoms:
F (3);
Cl (3);
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8iu9 (Na: 1) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Glucose
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8iua (Na: 1) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Isomaltose
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8iub (Na: 3) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Isomaltotriose
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8ixu (Na: 1) - Rat Transcobalamin in Complex with Cobalamin
Other atoms:
Cl (4);
Co (1);
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8izj (Na: 2) - Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp
Other atoms:
Cl (4);
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8izk (Na: 1) - Crystal Structure of Trypsin-Guanidine Complex at 2.05 Angstroms Resolution
Other atoms:
Cl (1);
Ca (1);
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8j0i (Na: 2) - Aldo-Keto Reductase Kmakr
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8j0u (Na: 1) - Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius.
Other atoms:
Cl (1);
Cd (9);
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8j2h (Na: 2) - Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Single Mutation (N137A) in Jellyfish Cytaeis Uchidae From Biortus
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8j2l (Na: 2) - Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus
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8j5a (Na: 1) - Single-Particle Cryo-Em Structure of Mouse Apoferritin at 1.19 Angstrom Resolution (Dataset A)
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8j6g (Na: 1) - Neutron Structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Phenylethylamine at Pd 9.0
Other atoms:
Cu (1);
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8j6m (Na: 1) - SIDT1 Protein
Other atoms:
Zn (2);
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8j98 (Na: 2) - A Near-Infrared Fluorescent Protein of De Novo Backbone Design
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8j9c (Na: 5) - Crystal Structure of M61 Peptidase (Apo-Form) From Xanthomonas Campestris
Other atoms:
Zn (4);
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8jbk (Na: 8) - Crystal Structure of Na+,K+-Atpase in the E1.3NA+ State
Other atoms:
Mn (2);
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8jc1 (Na: 8) - Crystal Structure of Pectocin M1 From Pectobacterium Carotovorum
Other atoms:
Mg (4);
Fe (8);
Cl (2);
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8jew (Na: 2) - Human Sodium-Dependent Vitamin C Transporter 1 Bound to L-Ascorbic Acid in An Inward-Open State
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8jfs (Na: 3) - Phosphate Bound Acylphosphatase From Deinococcus Radiodurans at 1 Angstrom Resolution
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8jgu (Na: 1) - Crystal Structure of N-Terminal Domain of Exopolyphosphatase From Deinococcus Radiodurans
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8jjm (Na: 2) - X-Ray Crystal Structure of A Multifunctional Enzyme (AMY63) From Vibrio Alginolyticus 63
Other atoms:
Ca (6);
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8jnc (Na: 1) - Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Maltophilin
Other atoms:
Fe (2);
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8jno (Na: 1) - Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf
Other atoms:
Fe (2);
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8jnq (Na: 1) - Crystal Structure of Cytochrome P450 Cfta From Streptomyces Torulosus Nrrl B-3889, in Complex with A Substrate Compound C
Other atoms:
Fe (1);
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8joo (Na: 1) - Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate Ikarugamycin
Other atoms:
Fe (2);
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8jto (Na: 2) - Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime
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8juq (Na: 18) - Crystal Structure of Chitoporin From Vibrio Harveyi in Complex with Gentamicin C1A
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8jur (Na: 8) - Crystal Structure of Chitoporin From Vibrio Harveyi in Complex with Gentamicin C1A (Multiple Binding Sites)
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8jwy (Na: 1) - Crystal Structure of A2AR-T4L in Complex with 2-118
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8jwz (Na: 1) - Crystal Structure of A2AR-T4L in Complex with AB928
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8jzh (Na: 3) - C. Glutamicum S-Adenosylmethionine Synthase
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8jzi (Na: 4) - Mutant S-Adenosylmethionine Synthase From C. Glutamicum
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