Sodium in PDB, part 281 (files: 11201-11240),
PDB 8ss7-8v8y
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11201-11240 (PDB 8ss7-8v8y).
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8ss7 (Na: 1) - Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Other atoms:
F (12);
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8ss8 (Na: 2) - Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunit Tarp Gamma-5 Bound to Competitive Antagonist Zk and Antiepileptic Drug Perampanel (Closed State)
Other atoms:
F (12);
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8ss9 (Na: 2) - Structure of Lbd-Tmd of Ampa Receptor GLUA2 in Complex with Auxiliary Subunit Tarp Gamma-5 Bound to Competitive Antagonist Zk and Antiepileptic Drug Perampanel (Closed State)
Other atoms:
F (12);
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8ssq (Na: 2) - Znfs 3-11 of Ccctc-Binding Factor (Ctcf) Complexed with 35MER Dna 35-4
Other atoms:
Zn (17);
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8ssr (Na: 2) - Znfs 3-11 of Ccctc-Binding Factor (Ctcf) Complexed with 35MER Dna 35- 20
Other atoms:
Zn (17);
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8sss (Na: 1) - Znfs 1-7 of Ccctc-Binding Factor (Ctcf) Complexed with 23MER
Other atoms:
Zn (14);
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8stn (Na: 1) - Crystal Structure of Kras-G12D/G75A Mutant, Gdp-Bound
Other atoms:
Cl (2);
Mg (2);
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8sv0 (Na: 2) - The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII
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8sv3 (Na: 2) - 7-Deazapurines and 5-Halogenpyrimidine Dna Duplex
Other atoms:
Cl (5);
F (10);
Mg (1);
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8sxw (Na: 1) - X-Ray Crystal Structure of Udp- 2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27, D98N Mutation, Apo Structure at pH 6
Other atoms:
Cl (2);
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8sy0 (Na: 2) - X-Ray Crystal Structure of Udp- 2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27 in Complex with Its Product Udp-2,3-Diacetamido-2,3-Dideoxy-D-Mannuronic Acid at pH 9
Other atoms:
Cl (1);
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8syb (Na: 1) - X-Ray Crystal Structure of Udp-2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27, D98N Variant in the Presence of Udp-2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid and Udp-N-Acetylglucosamine at pH 9
Other atoms:
Cl (2);
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8szz (Na: 24) - Cryoem Structure of Computationally Designed Nanocage O32-ZL4
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8t1b (Na: 4) - Cryo-Em Structure of Full-Length Human TRPV4 in Apo State
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8t1e (Na: 3) - Closed-State Cryo-Em Structure of Full-Length Human TRPV4 in the Presence of 4A-Pdd
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8t7i (Na: 7) - Structure of the S1CE Variant of Fab F1 (FABS1CE-F1)
Other atoms:
Cl (4);
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8t8l (Na: 1) - Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21
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8t9u (Na: 1) - Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg)
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8thi (Na: 2) - Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Haemophilus Influenzae (Parallel Dimer)
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8thj (Na: 4) - Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Haemophilus Influenzae (Antiparallel Dimer)
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8tjj (Na: 1) - Sam-Dependent Methyltransferase Redm Bound to Sam
Other atoms:
K (1);
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8tmt (Na: 2) - Crystal Structure of Kpc-44 Carbapenemase in Complex with Vaborbactam
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8trs (Na: 1) - Structure of the EPHA2 Crd Bound to FABS1CE_C1, Trigonal Form
Other atoms:
Cl (18);
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8trt (Na: 2) - Structure of the EPHA2 Crd Bound to FABS1CE_C1, Monoclinic Form
Other atoms:
Cl (4);
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8ts5 (Na: 8) - Structure of the Apo FABS1C_C1
Other atoms:
Cl (2);
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8u2q (Na: 2) - Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound)
Other atoms:
Zn (1);
Cl (2);
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8u36 (Na: 2) - The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and A Nuclear Localisation Signal Sequence in Frog Siadenovirus Core Protein VII
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8u8w (Na: 1) - Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound)
Other atoms:
Cl (2);
I (2);
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8u90 (Na: 1) - Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Apo, Hexagonal Form)
Other atoms:
I (2);
Cl (3);
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8u92 (Na: 6) - Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound, Orthorhombic P Form)
Other atoms:
Cl (28);
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8u9b (Na: 8) - Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Apo, P21 Form)
Other atoms:
Cl (8);
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8ur1 (Na: 4) - Crystal Structure N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate Bound Halide Free Active Site)
Other atoms:
Cl (4);
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8uzk (Na: 4) - Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Nadp+ Bound)
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8uzm (Na: 3) - Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Nadph Bound)
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8uzn (Na: 4) - Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Amp Bound)
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8uzo (Na: 4) - Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Adp Bound)
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8v2t (Na: 1) - Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148591
Other atoms:
F (2);
Cl (1);
Zn (1);
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8v4h (Na: 1) - X-Ray Structure of the Nadp-Dependent Reductase From Campylobacter Jejuni Responsible For the Synthesis of Cdp-Glucitol in the Presence of Cdp-Glucitol
Other atoms:
Cl (2);
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8v4j (Na: 1) - Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233
Other atoms:
Zn (1);
Cl (1);
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8v8y (Na: 1) - Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form)
Other atoms:
Mg (2);
Cl (3);
Page generated: Thu Dec 28 11:46:43 2023
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