Sodium in PDB 8jto: Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime

The structure of Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime, PDB code: 8jto was solved by P.Bunkum, A.Aunkham, B.Bert Van Den, R.C.Robinson, W.Suginta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.95 / 2.25
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	151.045, 151.045, 49.099, 90, 90, 120
R / Rfree (%)	18.7 / 22.3

The binding sites of Sodium atom in the Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime (pdb code 8jto). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime, PDB code: 8jto:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime within 5.0Å range: probe atom residue distance (Å) B Occ A:Na410 b:85.0 occ:0.33 NE2 A:HIS359 2.3 70.3 1.0 CE1 A:HIS359 3.0 67.0 1.0 CD2 A:HIS359 3.4 66.3 1.0 ND1 A:HIS359 4.2 68.9 1.0 CG A:HIS359 4.5 63.2 1.0

Sodium binding site 2 out of 2 in the Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Outer Membrane Porin of Burkholderia Pseudomallei (BPSOMP38) in Complex with Ceftazidime within 5.0Å range: probe atom residue distance (Å) B Occ A:Na411 b:58.4 occ:0.33 NE2 A:HIS358 2.2 53.1 1.0 O A:HOH591 2.4 30.1 0.3 CD2 A:HIS358 3.1 49.0 1.0 CE1 A:HIS358 3.2 51.6 1.0 CG A:HIS358 4.2 54.7 1.0 ND1 A:HIS358 4.3 53.4 1.0

P.Bunkum, A.Aunkham, B.Bert Van Den, R.C.Robinson, W.Suginta. Structure and Function of Outer Membrane Protein From Burkholderia Pseudomallei (BPSOMP38) To Be Published.