Sodium in PDB 8j2l: Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus

The structure of Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus, PDB code: 8j2l was solved by J.Wu, F.Wang, W.Gui, W.Cheng, Y.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.77 / 1.70
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	135.086, 135.086, 58.427, 90, 90, 120
R / Rfree (%)	14.6 / 16.9

The binding sites of Sodium atom in the Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus (pdb code 8j2l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus, PDB code: 8j2l:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:52.3 occ:1.00 O A:HOH587 2.0 36.7 1.0 O A:MET78 2.5 20.6 1.0 O A:HOH495 2.5 28.6 1.0 O A:GLU76 2.5 20.3 1.0 O A:HOH642 2.6 35.4 1.0 O A:HOH439 2.7 30.2 1.0 C A:GLU76 3.6 22.2 1.0 C A:MET78 3.7 21.0 1.0 N A:MET78 4.2 17.1 1.0 O A:HIS75 4.3 24.5 1.0 CA A:GLU76 4.4 22.4 1.0 C A:VAL77 4.5 17.1 1.0 CD A:PRO79 4.5 21.4 1.0 N A:PRO79 4.5 20.4 1.0 N A:VAL77 4.6 16.7 1.0 OE2 A:GLU80 4.6 24.5 1.0 CA A:MET78 4.6 19.2 1.0 O A:HOH636 4.7 49.6 1.0 CA A:VAL77 4.7 17.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na304 b:54.5 occ:1.00 O B:HOH578 2.1 42.6 1.0 O B:HOH565 2.4 36.5 1.0 O B:MET78 2.4 17.2 1.0 O B:HOH480 2.5 25.0 1.0 O B:GLU76 2.6 18.7 1.0 O B:HOH620 2.6 51.1 1.0 O B:HOH491 2.7 29.7 1.0 C B:GLU76 3.6 19.1 1.0 C B:MET78 3.6 16.6 1.0 N B:MET78 4.1 12.9 1.0 O B:HOH516 4.1 57.7 1.0 O B:HIS75 4.2 18.4 1.0 CA B:GLU76 4.3 20.5 1.0 C B:VAL77 4.4 14.9 1.0 CA B:MET78 4.5 14.2 1.0 N B:VAL77 4.5 16.4 1.0 N B:PRO79 4.6 16.9 1.0 CD B:PRO79 4.6 18.9 1.0 CA B:VAL77 4.7 14.2 1.0 OE2 B:GLU80 4.7 25.4 1.0 O B:HOH630 4.8 47.7 1.0 CG B:GLU76 5.0 30.4 1.0 O B:VAL77 5.0 14.1 1.0

J.Wu, F.Wang, W.Gui, W.Cheng, Y.Yang. Crystal Structure of A Bright Green Fluorescent Protein (Staygold) in Jellyfish Cytaeis Uchidae From Biortus To Be Published.