Sodium in PDB 8jew: Human Sodium-Dependent Vitamin C Transporter 1 Bound to L-Ascorbic Acid in An Inward-Open State

The binding sites of Sodium atom in the Human Sodium-Dependent Vitamin C Transporter 1 Bound to L-Ascorbic Acid in An Inward-Open State (pdb code 8jew). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Human Sodium-Dependent Vitamin C Transporter 1 Bound to L-Ascorbic Acid in An Inward-Open State, PDB code: 8jew:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Human Sodium-Dependent Vitamin C Transporter 1 Bound to L-Ascorbic Acid in An Inward-Open State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Sodium-Dependent Vitamin C Transporter 1 Bound to L-Ascorbic Acid in An Inward-Open State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:82.4 occ:1.00 OD2 A:ASP338 1.9 71.3 1.0 OG A:SER383 2.4 59.3 1.0 O1 A:ASC601 2.5 61.1 1.0 O A:SER381 2.6 56.7 1.0 OE1 A:GLU334 2.6 83.8 1.0 CD A:GLU334 2.9 70.2 1.0 CG A:ASP338 3.1 63.0 1.0 OE2 A:GLU334 3.3 88.2 1.0 N A:SER383 3.5 52.1 1.0 C1 A:ASC601 3.5 71.5 1.0 C A:SER381 3.6 52.5 1.0 CG A:GLU334 3.6 59.0 1.0 OD1 A:ASP338 3.6 83.8 1.0 CB A:SER383 3.7 60.2 1.0 CA A:SER383 4.0 55.0 1.0 C A:SER382 4.0 53.0 1.0 CB A:SER381 4.2 57.8 1.0 O2 A:ASC601 4.3 69.4 1.0 CB A:ASP338 4.3 48.6 1.0 C2 A:ASC601 4.3 77.9 1.0 N A:SER382 4.3 55.9 1.0 CA A:SER381 4.4 48.7 1.0 CA A:SER382 4.4 56.7 1.0 O4 A:ASC601 4.6 70.2 1.0 OG1 A:THR380 4.7 38.7 1.0 CG2 A:THR380 4.7 48.9 1.0 N A:SER381 4.7 47.8 1.0 O A:SER382 4.8 55.2 1.0 CB A:GLU334 4.9 53.3 1.0 O A:GLU334 4.9 48.6 1.0

Sodium binding site 2 out of 2 in the Human Sodium-Dependent Vitamin C Transporter 1 Bound to L-Ascorbic Acid in An Inward-Open State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Human Sodium-Dependent Vitamin C Transporter 1 Bound to L-Ascorbic Acid in An Inward-Open State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na603 b:79.8 occ:1.00 O3 A:ASC601 2.9 51.9 1.0 OG A:SER110 3.0 54.0 1.0 O A:GLY58 3.3 70.2 1.0 CG2 A:VAL62 3.5 45.2 1.0 CZ A:PHE112 3.5 56.0 1.0 CE1 A:PHE112 3.5 50.7 1.0 CE2 A:PHE112 3.6 65.2 1.0 CB A:SER110 3.6 54.0 1.0 C A:SER110 3.7 46.4 1.0 CD1 A:PHE112 3.7 50.4 1.0 O A:SER110 3.8 51.8 1.0 N A:PHE112 3.8 39.4 1.0 CD2 A:PHE112 3.8 62.1 1.0 N A:ALA111 3.8 40.0 1.0 C5 A:ASC601 3.8 78.5 1.0 CG A:PHE112 3.8 51.5 1.0 C3 A:ASC601 3.9 66.6 1.0 C A:ALA111 4.0 38.5 1.0 C A:GLY58 4.1 48.1 1.0 C4 A:ASC601 4.1 72.8 1.0 CA A:SER110 4.2 49.5 1.0 CA A:ALA111 4.2 48.3 1.0 CA A:THR59 4.3 50.0 1.0 CA A:PHE112 4.5 47.2 1.0 N A:THR59 4.6 49.0 1.0 C6 A:ASC601 4.6 76.3 1.0 O5 A:ASC601 4.7 59.2 1.0 O6 A:ASC601 4.7 74.9 1.0 O A:ALA111 4.7 41.8 1.0 CB A:PHE112 4.7 50.3 1.0 OG1 A:THR59 4.8 54.4 1.0 CB A:VAL62 4.8 38.2 1.0 N A:SER110 4.9 46.9 1.0 OD1 A:ASN377 5.0 40.8 1.0

T.A.Kobayashi, T.Kusakizako, O.Nureki. Cryo-Em Structures of Human Vitamin C Transporter SVCT1 To Be Published.