Sodium in PDB 8j0u: Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius.

Protein crystallography data

The structure of Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius., PDB code: 8j0u was solved by B.Maity, J.Tian, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.60 / 1.50
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.156, 181.156, 181.156, 90, 90, 90
R / Rfree (%) 15.9 / 18.1

Other elements in 8j0u:

The structure of Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Cadmium (Cd) 9 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius. (pdb code 8j0u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius., PDB code: 8j0u:

Sodium binding site 1 out of 1 in 8j0u

Go back to Sodium Binding Sites List in 8j0u
Sodium binding site 1 out of 1 in the Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na617

b:27.3
occ:1.00
O A:HOH890 1.7 36.1 1.0
O A:HOH821 2.9 11.8 1.0
ND1 A:HIS114 2.9 10.4 1.0
CE1 A:HIS114 3.7 8.9 1.0
OG A:SER118 3.7 11.6 0.5
OG1 A:THR115 3.8 12.0 1.0
CA A:THR115 3.8 10.1 1.0
N A:THR115 3.8 9.2 1.0
CG A:HIS114 4.0 9.2 1.0
C A:HIS114 4.0 9.2 1.0
O A:HIS114 4.1 9.1 1.0
CB A:HIS114 4.3 8.8 1.0
CB A:THR115 4.4 10.7 1.0
CB A:SER118 4.5 11.5 0.5
CB A:SER118 4.5 12.5 0.5
O A:LEU111 4.8 8.3 1.0
CA A:HIS114 4.8 7.9 1.0
NE2 A:HIS114 4.9 10.1 1.0
OG A:SER118 5.0 14.3 0.5

Reference:

B.Maity, J.Tian, S.Abe, T.Ueno. Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius. To Be Published.
Page generated: Wed Oct 9 12:36:03 2024

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