Sodium in PDB, part 278 (files: 11081-11120),
PDB 8icn-8jzh
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11081-11120 (PDB 8icn-8jzh).
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8icn (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Atp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
-
8ico (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Azt-Tp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
-
8icq (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of of Datp (0.1 Millimolar) and MNCL2 (0.5 Millimolar)
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8icr (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8ics (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8ict (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Ddatp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
-
8icw (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
-
8icx (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8icy (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + Thymidine- 5'-Triphosphate, Soaked in the Presence of Dttp and MNCL2
Other atoms:
Mn (1);
-
8icz (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of of Datp (1 Millimolar), MNCL2 (5 Millimolar), and Lithium Sulfate (75 Millimolar)
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8ig1 (Na: 2) - Crystal Structure of Wild-Type Transthyretin in Complex with Rafoxanide
Other atoms:
Cl (4);
I (4);
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8ihx (Na: 1) - X-Ray Crystal Structure of N372D Mutant of Endo-1,4-Beta Glucanase From Eisenia Fetida
Other atoms:
Mg (1);
Ca (1);
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8ihy (Na: 1) - X-Ray Crystal Structure of Q387E Mutant of Endo-1,4-Beta Glucanase From Eisenia Fetida
Other atoms:
Ca (1);
Mg (1);
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8ijl (Na: 2) - Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp
Other atoms:
F (4);
Al (1);
Mg (1);
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8ijm (Na: 2) - Cyo-Em Structure of K794A Non-Gastric Proton Pump in Na+ Bound E1AMPPCP State
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8ijn (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Nitric Oxide-Bound Fully Reduced State at 100 K
Other atoms:
Zn (2);
Mg (2);
Fe (4);
Cu (6);
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8ing (Na: 2) - Structure of the Ternary Complex of Lactoperoxidase with Substrate Nitric Oxide (No) and Product Nitrite Ion (NO2) at 1.98 A Resolution
Other atoms:
Ca (1);
I (13);
Fe (1);
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8iq8 (Na: 4) - Crystal Structure of 3,4-Dihydroxyphenylacetate 2,3-Dioxygenase (Dhpao) From Acinetobacter Baumannii
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8iu9 (Na: 1) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Glucose
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8iua (Na: 1) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Isomaltose
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8iub (Na: 3) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Isomaltotriose
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8j0u (Na: 1) - Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius.
Other atoms:
Cl (1);
Cd (9);
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8j2h (Na: 2) - Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Single Mutation (N137A) in Jellyfish Cytaeis Uchidae From Biortus
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8j2l (Na: 2) - Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus
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8j5a (Na: 1) - Single-Particle Cryo-Em Structure of Mouse Apoferritin at 1.19 Angstrom Resolution (Dataset A)
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8j6g (Na: 1) - Neutron Structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Phenylethylamine at Pd 9.0
Other atoms:
Cu (1);
-
8j98 (Na: 2) - A Near-Infrared Fluorescent Protein of De Novo Backbone Design
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8jbk (Na: 8) - Crystal Structure of Na+,K+-Atpase in the E1.3NA+ State
Other atoms:
Mn (2);
-
8jfs (Na: 3) - Phosphate Bound Acylphosphatase From Deinococcus Radiodurans at 1 Angstrom Resolution
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8jjm (Na: 2) - X-Ray Crystal Structure of A Multifunctional Enzyme (AMY63) From Vibrio Alginolyticus 63
Other atoms:
Ca (6);
-
8jnc (Na: 1) - Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Maltophilin
Other atoms:
Fe (2);
-
8jno (Na: 1) - Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf
Other atoms:
Fe (2);
-
8jnq (Na: 1) - Crystal Structure of Cytochrome P450 Cfta From Streptomyces Torulosus Nrrl B-3889, in Complex with A Substrate Compound C
Other atoms:
Fe (1);
-
8joo (Na: 1) - Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate Ikarugamycin
Other atoms:
Fe (2);
-
8jwy (Na: 1) - Crystal Structure of A2AR-T4L in Complex with 2-118
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8jwz (Na: 1) - Crystal Structure of A2AR-T4L in Complex with AB928
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8jzh (Na: 3) - C. Glutamicum S-Adenosylmethionine Synthase
Page generated: Thu Dec 28 11:40:49 2023
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