Sodium in PDB 8gt7: Structure of Falcipain and Human Stefin A Mutant Complex

The structure of Structure of Falcipain and Human Stefin A Mutant Complex, PDB code: 8gt7 was solved by S.Chakraborty, S.Biswas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.09 / 3.28
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	118.461, 119.62, 65.016, 90, 90, 90
R / Rfree (%)	27.2 / 30

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 44;

Binding sites:

The binding sites of Sodium atom in the Structure of Falcipain and Human Stefin A Mutant Complex (pdb code 8gt7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 44 binding sites of Sodium where determined in the Structure of Falcipain and Human Stefin A Mutant Complex, PDB code: 8gt7:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na315 b:38.6 occ:1.00 C3 A:PG4367 4.3 32.7 1.0 CD2 A:LEU190 4.5 66.9 1.0 C4 A:PG4367 4.6 42.4 1.0 CD1 A:LEU190 4.9 75.3 1.0 O2 A:PG4367 5.0 27.8 1.0 O3 A:PG4367 5.0 45.0 1.0

Sodium binding site 2 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na316 b:29.2 occ:1.00 O A:SER153 2.8 108.0 1.0 C A:SER153 3.8 101.1 1.0 NA A:NA360 4.0 48.8 1.0 O2 A:GOL312 4.2 38.1 1.0 CB A:ASP154 4.2 79.7 1.0 CB A:SER153 4.4 103.7 1.0 O1 B:PE8137 4.4 64.3 1.0 O A:HOH422 4.5 49.2 1.0 N A:ASP155 4.5 86.8 1.0 CA A:SER153 4.5 97.7 1.0 N A:ASP154 4.7 91.8 1.0 O3 A:GOL312 4.7 50.0 1.0 O A:CYS168 4.7 103.1 1.0 CA A:ASP154 4.8 86.2 1.0 C A:ASP154 4.8 89.2 1.0 CB A:ASP155 5.0 79.6 1.0

Sodium binding site 3 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na317 b:55.2 occ:1.00 OE1 A:GLU94 3.4 70.5 1.0 CB A:GLU94 4.0 89.4 1.0 CD A:GLU94 4.0 84.0 1.0 O A:HOH459 4.3 62.8 1.0 CE2 A:PHE75 4.5 85.1 1.0 CD2 A:PHE75 4.5 84.6 1.0 OE2 A:GLU94 4.6 87.0 1.0 CG A:GLU94 4.6 96.7 1.0 O A:GLU94 4.7 85.8 1.0

Sodium binding site 4 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na318 b:39.9 occ:1.00 O5 A:PG4321 3.6 47.8 1.0 CE A:MET2 4.1 70.1 1.0 O3 A:GOL363 4.4 51.6 1.0 C8 A:PG4321 4.5 51.8 1.0

Sodium binding site 5 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na348 b:51.0 occ:1.00 C4 A:PEG337 3.7 71.9 1.0 O2 A:PEG337 4.1 78.4 1.0 O4 A:PEG337 4.5 62.6 1.0 C3 A:PEG337 4.5 88.3 1.0 O A:HOH420 4.5 29.7 1.0

Sodium binding site 6 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na349 b:32.8 occ:1.00 O5 A:PG4367 3.7 48.8 1.0 C8 A:PG4367 4.3 54.2 1.0

Sodium binding site 7 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na350 b:30.5 occ:1.00 O1 A:PG4352 3.6 62.4 1.0 C2 B:GOL154 4.1 27.4 1.0 O2 B:GOL154 4.4 26.6 1.0 C2 A:PG4352 4.6 57.7 1.0 O1 B:GOL154 4.6 31.7 1.0 C1 B:GOL154 4.6 26.3 1.0 C1 A:PG4352 4.7 66.2 1.0 CE A:LYS160 5.0 88.2 1.0

Sodium binding site 8 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na354 b:22.8 occ:1.00 O A:HOH467 4.3 20.5 1.0 O25 A:PE8343 4.4 31.4 1.0 O A:HOH458 4.6 36.5 1.0 C23 A:PE8343 4.8 50.1 1.0

Sodium binding site 9 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na355 b:42.1 occ:1.00 C2 A:PE8342 3.4 86.9 1.0 O1 A:PE8342 3.8 79.8 1.0 O2 A:GOL308 4.0 52.8 1.0 C1 E:GOL104 4.2 77.0 1.0 C3 A:GOL308 4.2 36.3 1.0 C3 A:PE8342 4.3 77.5 1.0 C2 A:GOL308 4.4 31.6 1.0 C1 A:GOL308 4.5 29.0 1.0 O1 E:GOL104 4.7 79.5 1.0 O4 A:PE8342 4.7 73.0 1.0 O2 E:GOL104 4.8 75.8 1.0 O3 A:GOL308 5.0 35.9 1.0

Sodium binding site 10 out of 44 in the Structure of Falcipain and Human Stefin A Mutant Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of Structure of Falcipain and Human Stefin A Mutant Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na356 b:50.0 occ:1.00 C3 B:PG4124 3.3 54.0 1.0 C1 A:GOL306 3.5 48.5 1.0 O B:HOH224 3.9 39.0 1.0 O2 B:PG4124 4.0 62.9 1.0 O3 B:PG4124 4.2 61.4 1.0 O1 B:PG4124 4.2 23.8 1.0 C4 B:PG4124 4.2 59.6 1.0 O2 A:GOL309 4.2 32.9 1.0 O B:HOH229 4.2 87.9 1.0 O2 A:GOL306 4.4 52.6 1.0 C2 B:PG4124 4.4 60.1 1.0 O1 A:GOL306 4.5 59.5 1.0 C2 A:GOL306 4.6 50.9 1.0 O1 A:PEG337 4.6 78.7 1.0 O3 A:GOL309 4.6 34.3 1.0 C1 B:PG4124 4.7 38.7 1.0

S.Chakraborty, S.Biswas. Structure of Falcipain and Human Stefin A Complex To Be Published.