Sodium in PDB 8gpz: Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with C239- 0012

The structure of Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with C239- 0012, PDB code: 8gpz was solved by T.H.Park, B.I.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.67 / 1.53
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	32.158, 47.318, 79.54, 90, 90, 90
R / Rfree (%)	18.6 / 21.2

The binding sites of Sodium atom in the Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with C239- 0012 (pdb code 8gpz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with C239- 0012, PDB code: 8gpz:

Sodium binding site 1 out of 1 in the Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with C239- 0012


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with C239- 0012 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:11.6 occ:1.00 O A:LYS160 2.3 11.3 1.0 O A:HOH331 2.3 12.1 1.0 O A:GLU163 2.3 16.0 1.0 OH A:TYR65 2.4 15.8 1.0 O A:HOH373 2.5 25.6 1.0 C A:LYS160 3.3 9.9 1.0 CZ A:TYR65 3.4 15.7 1.0 C A:GLU163 3.4 14.5 1.0 CE2 A:TYR65 3.8 11.7 1.0 N A:GLU163 3.9 11.6 1.0 CA A:LYS160 4.0 10.3 1.0 CA A:GLU163 4.0 14.6 1.0 CB A:GLU163 4.2 17.4 1.0 N A:ILE161 4.4 10.6 1.0 O A:GLN159 4.4 13.8 1.0 CE1 A:TYR65 4.5 13.9 1.0 N A:LEU164 4.5 13.8 1.0 CA A:ILE161 4.6 10.9 1.0 N A:ASN162 4.7 12.1 1.0 C A:ILE161 4.8 11.5 1.0 CA A:LEU164 4.9 11.0 1.0 CB A:LYS160 4.9 12.0 1.0

T.H.Park, B.I.Lee. Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with C239_0012 To Be Published.