Sodium in PDB 8gnk: Cryoem Structure of Cytosol-Facing, Substrate-Bound RATGAT1

The structure of Cryoem Structure of Cytosol-Facing, Substrate-Bound RATGAT1 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Cryoem Structure of Cytosol-Facing, Substrate-Bound RATGAT1 (pdb code 8gnk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryoem Structure of Cytosol-Facing, Substrate-Bound RATGAT1, PDB code: 8gnk:

Sodium binding site 1 out of 1 in the Cryoem Structure of Cytosol-Facing, Substrate-Bound RATGAT1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryoem Structure of Cytosol-Facing, Substrate-Bound RATGAT1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na604 b:63.5 occ:1.00 OE2 A:ABU605 3.4 63.6 1.0 O A:SER295 3.8 55.0 1.0 O A:PHE294 4.1 31.6 1.0 N A:GLY65 4.2 34.1 1.0 CD A:ABU605 4.2 57.5 1.0 OH A:TYR140 4.2 50.4 1.0 CA A:SER295 4.3 28.4 1.0 CA A:GLY63 4.3 45.0 1.0 CA A:GLY65 4.4 31.9 1.0 OD1 A:ASN66 4.4 38.7 1.0 C A:SER295 4.5 45.5 1.0 N A:LEU64 4.7 43.8 1.0 C A:GLY63 4.7 48.8 1.0 CG A:ABU605 4.8 52.0 1.0 OG A:SER396 4.8 55.7 1.0 N A:GLY63 4.9 50.0 1.0 OE1 A:ABU605 4.9 52.4 1.0

S.R.Nayak, D.Joseph, G.Hofner, A.Dakua, K.T.Wanner, B.I.Kanner, A.Penmatsa. Cryoem Structure of Gaba Transporter 1 Reveals Substrate Recognition and Transport Mechanism To Be Published.